Gencode, TSS for known genes.

TSS collection from Gencode v24

• Raw data was downloaded from: UCSC Table browser
• Input file format: TXT
• Download date: 11-7-2017

From H. sapiens (Dec 2013 GRCh38/hg38).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	gencode.v28.hg38.sga	TSS from Gencode v28	ENSEMBL	-
2	gencode.v24.ucsc.hg38.sga	TSS from Gencode v24	ENSEMBL	-

Data was downloaded from the UCSC table browser selecting all fields of the primary table plus RefSeq ID and description from a secondary table. Promoters were fitered if they were not from protein coding genes and if they did not have a RefSeq ID.

• Wright JC, Mudge J, Weisser H, Barzine MP, Gonzalez JM, Brazma A, Choudhary JS, Harrow J
  Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Nat Commun. 2016 Jun 2;7:11778. doi: 10.1038/ncomms11778. 27250503