Gencode, TSS for known genes. LiftOver from hg38.

TSS collection from GENCODE version v47

• Raw data was downloaded from: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/
• Input file format: GFF3
• Download date: 17-10-2024

From H. sapiens Jan. 2022 T2T-CHM13v2.0/hs1.

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	gencode.v47.hs1.sga	TSS from Gencode v47	TSS	-

The SGA file contained in this directory is a liftOver version of the corresponding file in:

https://epd.expasy.org/ftp/mga/hg38/gencode/

The liftOver script can be found in:

https://epd.expasy.org/ftp/mga/hs1/gencode/scripts/

For more information on how the original file was generated, see:

https://epd.expasy.org/ftp/mga/hg38/gencode/gencode.html/

• Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE et al.
  GENCODE 2021. Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923. doi: 10.1093/nar/gkaa1087. 33270111