Ensembl97, TSS collection for non-coding RNAs.

The list of non-coding RNA genes and their transcription start site was downloaded from Ensembl Genes 97.

• Raw data was downloaded from: BioMart
• Input file format: TXT
• Download date: 08-07-2019

From M. musculus (March 2012 GRCm38/mm10).

Genome Annotation:

	Filename	Description	Feature	GEO-ID
1	ensembl97_TSS.sga	TSS from Ensembl	TSS	-

Data was downloaded from BioMart selecting the following attributes:

1. Gene stable ID
2. Transcript stable ID
3. Chromosome/scaffold name
4. Strand
5. Gene start
6. Gene end
7. Transcript start
8. Transcript end
9. Gene name
10. Gene description
11. RefSeq mRNA ID
12. UCSC stable ID
13. Gene type
14. Transcript type

• Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T,, Izuogu OG, Janacek SH, Juettemann T, To JK, Laird MR, Lavidas I, Liu Z, Loveland JE, Maurel T, McLaren W, Moore B, Mudge J, Murphy DN, Newman V, Nuhn M, Ogeh D, Ong CK, Parker A, Patricio M, Riat HS, Schuilenburg H, Sheppard D, Sparrow H, Taylor K, Thormann A, Vullo A, Walts B, Zadissa A, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Cunningham F, Yates A, Flicek P
  Ensembl 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D754-D761. doi: 10.1093/nar/gkx1098. 29155950