RefSeq Genes, TSS and other annotations for protein-coding genes.


Transcription Start Sites (TSS), Transcription End Sites (TES) and CDS start sites from the RefSeq annotation



From M. musculus (March 2012 GRCm38/mm10).

Genome Annotation:

Filename Description Feature GEO-ID
1 MmRefseqTss.sga Transcript start sites TSS -
2 MmRefseqTes.sga Transcript end sites TES -
3 MmRefseqCds.sga CDS start sites CDS -

Technical Notes

GFF file was converted in SGA format using an in-house script. Transcrips were reteined if id was of the following type 'NM_XXXXXX' and CDS if protein id was similar to 'NP_XXXXXX'.


Last update: 1 Oct 2018