Beguelin 2013, EZH2 maps in Large B-Cell Lymphoma cell lines.


EZH2 and H3K27me3 ChIP sequencing of mouse BCL1 cell lines transduced with Y641F EZH2.



From M. musculus (July 2007 NCBI37/mm9).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1129365.sga BCL1|H3K27me3|WT EZH2| H3K27me3 GSM1129365
2 GSM1129366.sga BCL1|H3K27me3|Y641F EZH2| H3K27me3 GSM1129366
3 GSM1129367.sga BCL1|H3K27me3|Y641N EZH2| H3K27me3 GSM1129367

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v1.1.1. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using (ChIP-Seq v. 1.5.3).


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Last update: 1 Oct 2018