Lien 2014, transcriptional goverance of hair follicle stem cells by canonical Wnt regulators.

Wnt regulators (TCF3, TCF4 and pan-TLE) were analyzed in hair follicle stem cells (HFSC) after FACS sorting.

• Raw data was downloaded from: GEO
• Input file format: SRA
• Download date: n/a

From M. musculus (July 2007 NCBI37/mm9).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1187391_qHFSC_input.sga	qHFSC cells|input	input	GSM1187391
2	GSM1187392_qHFSC_TCF3_ChIPSeq.sga	qHFSC cells|TCF3	TCF3	GSM1187392
3	GSM1187393_qHFSC_TCF4_ChIPSeq.sga	qHFSC cells|TCF4	TCF4	GSM1187393
4	GSM1187394_qHFSC_TLE_ChIPSeq.sga	qHFSC cells|TLE	TLE	GSM1187394

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

• Lien WH, Polak L, Lin M, Lay K, Zheng D, Fuchs E
  In vivo transcriptional governance of hair follicle stem cells by canonical Wnt regulators. Nat Cell Biol. 2014 Feb;16(2):179-90. doi: 10.1038/ncb2903. Epub 2014 Jan 26. 24463605
• GEO series GSE48878: In vivo transcriptional goverance of hair follicle stem cells by canonical Wnt regulators