Ridinger 2012, Spi-1/PU.1 DNA occupancy in erythroleukemia.

Genome wide analysis of Spi-1 binding sites in spleen-derived Spi-1-transgenic erythroleukemic cells (strain: DBA2J) and spleen from Spi-1-transgenic mice with erythroleukemia in vivo (strain: DBA2J; marked as inVivo samples).

• Raw data was downloaded from GEO series: GSE33611
• Input file format: BED

From M. musculus (July 2007 NCBI37/mm9).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM831045_Spi1.sga	Eythroleukemia|Spi-1|cell culture	Spi1	GSM831045
2	GSM912524_Spi1_inVivo.sga	Eythroleukemia|Spi-1|in vivo	Spi1	GSM912524
3	GSM831046_PolII.sga	Eythroleukemia|PolII|cell culture	PolII	GSM831046
4	GSM831047_H3K36me3.sga	Eythroleukemia|H3K36me3|cell culture	H3K36me3	GSM831047
5	GSM831048_Input.sga	Eythroleukemia|Input|cell culture	Input	GSM831048
6	GSM831049_IgG.sga	Eythroleukemia|IgG|cell culture	IgG	GSM831049
7	GSM912525_Input_inVivo.sga	Eythroleukemia|Input|in vivo	Input	GSM912525

ChIP-seq peaks files:

	Filename	Description	Feature	GEO-ID
1	GSM831045_Spi1_peaks.sga	Eythroleukemia|Spi-1 peaks|cell culture	Spi1	GSM831045
2	GSM912524_Spi1_inVivo_peaks.sga	Eythroleukemia|Spi-1 peaks|in vivo	Spi1	GSM912524
3	GSM831046_PolII_peaks.sga	Eythroleukemia|PolII peaks|cell culture	PolII	GSM831046

• Ridinger-Saison M, Boeva V, Rimmelé P, Kulakovskiy I, Gallais I, Levavasseur B, Paccard C, Legoix-Né P, Morlé F, Nicolas A, Hupé P, Barillot E, Moreau-Gachelin F, Guillouf C
  Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia. Nucleic Acids Res. 2012 Oct;40(18):8927-41. doi: 10.1093/nar/gks659. Epub 2012 Jul 11. 22790984
• GEO series GSE33611: Spi-1/PU.1 activates transcription through clustered DNA occupancy in erythroleukemia