Ridinger 2012, Spi-1/PU.1 DNA occupancy in erythroleukemia.


Genome wide analysis of Spi-1 binding sites in spleen-derived Spi-1-transgenic erythroleukemic cells (strain: DBA2J) and spleen from Spi-1-transgenic mice with erythroleukemia in vivo (strain: DBA2J; marked as inVivo samples).



From M. musculus (July 2007 NCBI37/mm9).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM831045_Spi1.sga Eythroleukemia|Spi-1|cell culture Spi1 GSM831045
2 GSM912524_Spi1_inVivo.sga Eythroleukemia|Spi-1|in vivo Spi1 GSM912524
3 GSM831046_PolII.sga Eythroleukemia|PolII|cell culture PolII GSM831046
4 GSM831047_H3K36me3.sga Eythroleukemia|H3K36me3|cell culture H3K36me3 GSM831047
5 GSM831048_Input.sga Eythroleukemia|Input|cell culture Input GSM831048
6 GSM831049_IgG.sga Eythroleukemia|IgG|cell culture IgG GSM831049
7 GSM912525_Input_inVivo.sga Eythroleukemia|Input|in vivo Input GSM912525

ChIP-seq peaks files:

Filename Description Feature GEO-ID
1 GSM831045_Spi1_peaks.sga Eythroleukemia|Spi-1 peaks|cell culture Spi1 GSM831045
2 GSM912524_Spi1_inVivo_peaks.sga Eythroleukemia|Spi-1 peaks|in vivo Spi1 GSM912524
3 GSM831046_PolII_peaks.sga Eythroleukemia|PolII peaks|cell culture PolII GSM831046

Technical Notes

BED files were directly converted into SGA files using in-house software .


Last update: 1 Oct 2018