UCSC, TSS for known genes

Description

Transcription start sites inferred form mm9 KnownGenes track from UCSC Genome Browser.

Source

Data available at: http://genome.ucsc.edu/cgi-bin/hgTables
Input file formats : GTF

Samples

From M. musculus (July 2007 NCBI37/mm9).

Filename Description Feature GEO-ID
1 ucsc_promoter_list.sga TSS from UCSC known genes TSS -

Technical Notes

Table was downloaded in March 2014 with the following attributes: mm9.knownGene, mm9.ensemblSource, mm9.kgXref, mm9.knownToEnsembl, mm9.refSeqStatus, mm9.spMrna.
Genes were retained if annotated as "protein coding" or if they had a protein ID or a refSeq status.

References

  1. Dreos, R., Ambrosini, G., Périer, R., Bucher, P
    EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era. Nucleic Acids Res. (2013) D157-64. PMID: 23193273