Wang 2011, Notch1 and RBPJ binding in human and murine T-lymphoblastic leukemia cells.


This serie has data from Notch1 and Rbpj binding in two Notch1-dependent murine T-acute lymphoblastic leukemia cell lines T6E and G4A2.



From M. musculus (July 2007 NCBI37/mm9).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM732913.sga T6E|Notch1 Notch1 GSM732913
2 GSM732914.sga T6E|Rbpj Rbpj GSM732914
3 GSM732915.sga T6E|input input GSM732915
4 GSM732916.sga G4A2|Notch1 Notch1 GSM732916
5 GSM732917.sga G4A2|Rbpj Rbpj GSM732917
6 GSM732918.sga G4A2|input input GSM732918

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the hg19 genome using Bowtie2 version 2.2.9. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.27.0 (bedtools). SGA conversion was carried out using (ChIP-Seq v. 1.5.3).


Last update: 1 Oct 2018