Karmodiya 2015, Histone marks and RNA Pol II ChIP-seq in Plasmodium falciparum.

Description

ChIP-seq against histone H3, 10 histone lysine methylations and acetylations, and RNA polymerase II in the malaria parasite P. falciparum at three stages of its intra-erythrocytic developmental cycle (IDC).

Source

Samples

From P. falciparum (Apr 2016 ASM276v2/pfa2).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSE63369_H3.sga IDC|H3|all samples H3 -
2 GSE63369_H3K14ac.sga IDC|H3K14ac|all samples H3K14ac -
3 GSE63369_H3K27ac.sga IDC|H3K27ac|all samples H3K27ac -
4 GSE63369_H3K27me3.sga IDC|H3K27me3|all samples H3K27me3 -
5 GSE63369_H3K4me1.sga IDC|H3K4me1|all samples H3K4me1 -
6 GSE63369_H3K4me2.sga IDC|H3K4me2|all samples H3K4me2 -
7 GSE63369_H3K4me3.sga IDC|H3K4me3|all samples H3K4me3 -
8 GSE63369_H3K79me3.sga IDC|H3K79me3|all samples H3K79me3 -
9 GSE63369_H3K9ac.sga IDC|H3K9ac|all samples H3K9ac -
10 GSE63369_H3K9me3.sga IDC|H3K9me3|all samples H3K9me3 -
11 GSE63369_H4ac.sga IDC|H4ac|all samples H4ac -
12 GSE63369_PolII.sga IDC|PolII|all samples PolII -
13 GSE63369_input.sga IDC|input|all samples input -
14 GSM1547552_k1_s1.sga IDC|input|18h input GSM1547552
15 GSM1547553_k2_s1.sga IDC|input|30h input GSM1547553
16 GSM1547554_k3_s1.sga IDC|input|40h input GSM1547554
17 GSM1547555_k19_new.sga IDC|H3K4me1|18h H3K4me1 GSM1547555
18 GSM1547556_k20_new.sga IDC|H3K4me1|30h H3K4me1 GSM1547556
19 GSM1547557_k21_new.sga IDC|H3K4me1|40h H3K4me1 GSM1547557
20 GSM1547558_k7_slide2.sga IDC|H3K4me2|18h H3K4me2 GSM1547558
21 GSM1547559_k8_slide2.sga IDC|H3K4me2|30h H3K4me2 GSM1547559
22 GSM1547560_k9_slide2.sga IDC|H3K4me2|40h H3K4me2 GSM1547560
23 GSM1547561_k7_s1.sga IDC|H3K4me3|18h H3K4me3 GSM1547561
24 GSM1547562_k8_s1.sga IDC|H3K4me3|30h H3K4me3 GSM1547562
25 GSM1547563_k9_s1.sga IDC|H3K4me3|40h H3K4me3 GSM1547563
26 GSM1547564_k10_s1.sga IDC|H3K9ac|18h H3K9ac GSM1547564
27 GSM1547565_k11_s1.sga IDC|H3K9ac|30h H3K9ac GSM1547565
28 GSM1547566_k12_s1.sga IDC|H3K9ac|40h H3K9ac GSM1547566
29 GSM1547567_k7_new.sga IDC|H3K9me3|18h H3K9me3 GSM1547567
30 GSM1547568_k8_new.sga IDC|H3K9me3|30h H3K9me3 GSM1547568
31 GSM1547569_k9_new.sga IDC|H3K9me3|40h H3K9me3 GSM1547569
32 GSM1547570_k10_slide2.sga IDC|H3K14ac|18h H3K14ac GSM1547570
33 GSM1547571_k11_slide2.sga IDC|H3K14ac|30h H3K14ac GSM1547571
34 GSM1547572_k12_slide2.sga IDC|H3K14ac|40h H3K14ac GSM1547572
35 GSM1547573_k4_new.sga IDC|H3K27ac|18h H3K27ac GSM1547573
36 GSM1547574_k5_new.sga IDC|H3K27ac|30h H3K27ac GSM1547574
37 GSM1547575_k6_new.sga IDC|H3K27ac|40h H3K27ac GSM1547575
38 GSM1547576_k16_new.sga IDC|H3K27me3|18h H3K27me3 GSM1547576
39 GSM1547577_k17_new.sga IDC|H3K27me3|30h H3K27me3 GSM1547577
40 GSM1547578_k18_new.sga IDC|H3K27me3|40h H3K27me3 GSM1547578
41 GSM1547579_k13_new.sga IDC|H3K79me3|18h H3K79me3 GSM1547579
42 GSM1547580_k14_new.sga IDC|H3K79me3|30h H3K79me3 GSM1547580
43 GSM1547581_k15_new.sga IDC|H3K79me3|40h H3K79me3 GSM1547581
44 GSM1547582_k1_new.sga IDC|H4ac|18h H4ac GSM1547582
45 GSM1547583_k2_new.sga IDC|H4ac|30h H4ac GSM1547583
46 GSM1547584_k3_new.sga IDC|H4ac|40h H4ac GSM1547584
47 GSM1547585_k4_slide2.sga IDC|H3|18h H3 GSM1547585
48 GSM1547586_k5_slide2.sga IDC|H3|30h H3 GSM1547586
49 GSM1547587_k6_slide2.sga IDC|H3|40h H3 GSM1547587
50 GSM1547588_k10_new.sga IDC|PolII|18h PolII GSM1547588
51 GSM1547589_k11_new.sga IDC|PolII|30h PolII GSM1547589
52 GSM1547590_k12_new.sga IDC|PolII|40h PolII GSM1547590

Technical Notes

BED files were converted to SGA using bed2sga (ChIP-Seq v. 1.5.4).

References

Last update: 10 Dec 2018