Below is a list of paralogous Ultraconserved Genomic Regulatory Blocks (UGRBs) in the Human genome (hg19 assembly).

Paralog GroupCluster nameCluster IDPosition#UCNEsAssociated genes UCNEs forming the cluster
1BARHL1_cluster 572 chr9:135495519-135745987 4AK8; BARHL1; DDX31; GTF3C4; show
BARHL2_cluster 43 chr1:90552790-91411295 26BARHL2; ZNF326; ZNF644; show
 
2BCL11A_cluster 285 chr2:57968022-60795444 92BCL11A; CCDC85A; FANCL; FLJ30838; MIR4432; PAPOLG; VRK2; show
BCL11B_cluster 181 chr14:98603943-99883837 15BCL11B; C14orf177; C14orf64; SETD3; show
 
3CPEB2_cluster 379 chr4:14576133-15071596 4CPEB2; LOC152742; LOC441009; show
CPEB4_cluster 432 chr5:173385122-173387317 3C5orf47; CPEB4; show
 
4DACH1_cluster 147 chr13:71241445-73251933 73ATXN8OS; DACH1; MZT1; show
DACH2_cluster 603 chrX:85131497-86074940 15CHM; DACH2; show
 
5EBF1_cluster 427 chr5:157198694-158509587 27CLINT1; EBF1; LSM11; show
EBF2_cluster 563 chr8:25751964-26228326 5EBF2; PPP2R2A; show
EBF3_cluster 90 chr10:129964273-131958079 96CTAGE7P; EBF3; GLRX3; LOC387723; MGMT; MIR4297; MKI67; show
 
6FOXB1_cluster 191 chr15:60197402-60824321 14ANXA2; BNIP2; FOXB1; NARG2; RORA; show
FOXB2_cluster 585 chr9:79417069-79628150 2FOXB2; PRUNE2; show
 
7FOXP1_cluster 355 chr3:70091768-71574384 49FOXP1; MITF; show
FOXP2_cluster 506 chr7:113770949-115775846 83FOXP2; MDFIC; MIR3666; TES; TFEC; show
 
8GSX1_cluster 139 chr13:28079232-28868654 8ATP5EP2; CDX2; FLT3; GSX1; LNX2; MTIF3; PAN3; PAN3-AS1; PDX1; POLR1D; PRHOXNB; show
GSX2_cluster 387 chr4:54867914-54962586 4CHIC2; GSX2; RPL21P44; show
 
9HOXA_cluster 528 chr7:26231439-27646322 24C7orf71; CBX3; EVX1; HIBADH; HNRNPA2B1; HOTAIRM1; HOTTIP; HOXA-AS3; HOXA-AS5; HOXA1; HOXA10; HOXA10-HOXA9; HOXA11; HOXA13; HOXA2; HOXA3; HOXA4; HOXA5; HOXA6; HOXA7; HOXA9; KIAA0087; LOC441204; MIR196B; SKAP2; SNX10; show
HOXB_cluster 233 chr17:46255887-46371616 3MIR4315-1; MIR4315-2; SKAP1; show
HOXD_cluster 307 chr2:175967909-178084536 30ATF2; ATP5G3; EVX2; HNRNPA3; HOXD-AS1; HOXD-AS2; HOXD1; HOXD10; HOXD11; HOXD12; HOXD13; HOXD3; HOXD4; HOXD8; HOXD9; KIAA1715; LOC375295; MIR10B; MIR1246; MIR4444-1; MIR933; MTX2; show
 
10IRXA_cluster 436 chr5:2112526-4805550 31C5orf38; IRX1; IRX2; IRX4; LOC285577; LOC340094; show
IRXB_cluster 201 chr16:50493248-55425289 60AKTIP; BRD7; CHD9; CRNDE; CYLD; FTO; IRX3; IRX5; IRX6; LOC100505619; LOC388276; LOC643714; LOC643802; MMP2; NKD1; NOD2; RBL2; RPGRIP1L; SALL1; SNX20; TOX3; show
 
11IRXB_cluster 201 chr16:50493248-55425289 60AKTIP; BRD7; CHD9; CRNDE; CYLD; FTO; IRX3; IRX5; IRX6; LOC100505619; LOC388276; LOC643714; LOC643802; MMP2; NKD1; NOD2; RBL2; RPGRIP1L; SALL1; SNX20; TOX3; show
SALL3_cluster 245 chr18:75544796-77044092 33ATP9B; GALR1; SALL3; show
 
12LHX1_cluster 229 chr17:35012232-35590289 17AATF; ACACA; LHX1; MIR2909; MRM1; show
LHX2_cluster 569 chr9:126504530-127148256 9DENND1A; LHX2; LOC100129034; NEK6; PSMB7; show
 
13LMO1_cluster 100 chr11:8199373-8318138 4LMO1; RIC3; STK33; show
LMO3_cluster 112 chr12:16171114-18230014 30DERA; LMO3; MGST1; MIR3974; RERGL; SKP1P2; SLC15A5; show
 
14MAB21L1_cluster 141 chr13:35772853-36246874 12MAB21L1; MIR548F5; NBEA; show
MAB21L2_cluster 409 chr4:151236329-151858689 17LRBA; MAB21L2; show
 
15MEIS1_cluster 289 chr2:65941809-68408085 45C1D; ETAA1; LOC644838; MEIS1; MIR4778; PNO1; PPP3R1; SPRED2; WDR92; show
MEIS2_cluster 198 chr15:35545967-38172901 67ANP32AP1; ATPBD4; C15orf41; CSNK1A1P1; LOC100507466; LOC145845; MEIS2; MIR3942; MIR4510; TMCO5A; show
 
16MYT1L_cluster 268 chr2:1792897-2335481 4LOC730811; MYT1L; TSSC1; show
ST18_cluster 542 chr8:53086455-53207947 11ST18; show
 
17NFIA_cluster 27 chr1:60700474-62104266 19C1orf87; NFIA; TM2D1; show
NFIB_cluster 577 chr9:14082258-14308186 10NFIB; show
 
18NKX6-1_cluster 392 chr4:84597991-85364995 19AGPAT9; NKX6-1; show
NKX6-2_cluster 91 chr10:134471489-134567119 3INPP5A; NKX6-2; show
 
19NR2F1_cluster 455 chr5:90903471-94229447 67ANKRD32; FAM172A; FLJ42709; KIAA0825; LOC100129716; MCTP1; MIR2277; NR2F1; POU5F2; show
NR2F2_cluster 196 chr15:95074218-98198451 57LOC145820; LOC400456; LOC91948; MCTP2; MIR1469; NR2F2; SPATA8; show
 
20NRXN1_cluster 282 chr2:50148180-50848624 3NRXN1; show
NRXN3_cluster 176 chr14:80158466-80482491 4DIO2; NRXN3; show
 
21ONECUT1_cluster 187 chr15:53045086-54047177 8FAM214A; ONECUT1; WDR72; show
ONECUT2_cluster 262 chr18:54528381-54698095 2ONECUT2; WDR7; show
 
22OTX1_cluster 287 chr2:63014713-63662144 16DBIL5P2; EHBP1; LOC100132215; OTX1; WDPCP; show
OTX2_cluster 168 chr14:56980554-57759135 18C14orf101; EXOC5; MUDENG; NAA30; OTX2; OTX2OS1; PELI2; show
 
23PAX2_cluster 81 chr10:102372689-102619078 15FAM178A; HIF1AN; PAX2; show
PAX5_cluster 582 chr9:36978914-37340404 10LOC100506710; PAX5; ZCCHC7; show
 
24PBX1_cluster 48 chr1:164023565-164681742 7NUF2; PBX1; show
PBX3_cluster 570 chr9:128159800-129253379 42FAM125B; GAPVD1; MAPKAP1; NRON; PBX3; show
 
25POU3F1_cluster 11 chr1:38561073-39152174 3LOC339442; MIR3659; POU3F1; RRAGC; show
POU3F2_cluster 486 chr6:97516512-99633821 42FAXC; FBXL4; KLHL32; MIR2113; MIR548H3; MMS22L; POU3F2; show
POU3F3_cluster 266 chr2:103538824-105698050 44LOC100287010; LOC100506421; LOC150568; LOC284998; MRPS9; POU3F3; TMEM182; show
POU3F4_cluster 602 chrX:81464503-82766968 10CYLC1; POU3F4; SH3BGRL; show
 
26POU4F1_cluster 150 chr13:78814060-79843756 25EDNRB; POU4F1; RBM26; RNF219; show
POU4F2_cluster 406 chr4:147184812-147966041 18EDNRA; POU4F2; SLC10A7; TTC29; show
 
27SATB1_cluster 357 chr3:17327663-19034380 37KCNH8; LOC339862; SATB1; TBC1D5; show
SATB2_cluster 310 chr2:199202365-200312766 12PLCL1; SATB2; show
 
28SMAD2_cluster 260 chr18:44770572-45213479 6IER3IP1; SMAD2; show
SMAD3_cluster 192 chr15:67199281-68080218 21AAGAB; C15orf61; IQCH; LOC100506686; MAP2K5; SMAD3; SMAD6; show
 
29SOX1_cluster 157 chr13:111552824-112063548 3ANKRD10; ARHGEF7; SOX1; TEX29; show
SOX2_cluster 373 chr3:180436793-182314792 29ATP11B; CCDC39; DNAJC19; FLJ46066; FXR1; SOX2; SOX2-OT; show
SOX3_cluster 609 chrX:139381246-139675267 4CXorf66; RP1-177G6.2; SOX3; show
 
30SOX14_cluster 362 chr3:136905247-137492079 9CLDN18; IL20RB; SOX14; show
SOX21_cluster 151 chr13:95314312-95674886 9ABCC4; GPR180; SOX21; show
 
31SOX5_cluster 113 chr12:22920003-24691414 26ETNK1; MIR920; SOX5; show
SOX6_cluster 103 chr11:15389475-16621980 27C11orf58; INSC; SOX6; show
 
32SP3_cluster 306 chr2:174062737-175216673 28CDCA7; MLK7-AS1; OLA1; SP3; ZAK; show
SP8_cluster 525 chr7:20829680-22092167 20CDCA7L; DNAH11; RAPGEF5; RPL23P8; SP4; SP8; show
 
33TCF12_cluster 189 chr15:57426321-57580603 3TCF12; show
TCF4_cluster 261 chr18:53004012-53963879 16LOC100505474; TCF4; TXNL1; show
 
34TFAP2A_cluster 463 chr6:8153373-10408287 34EEF1E1; HULC; LOC100506207; SLC35B3; TFAP2A; show
TFAP2B_cluster 473 chr6:50060900-51149432 14DEFB112; PKHD1; TFAP2B; TFAP2D; show
 
35TSHZ1_cluster 244 chr18:72348362-73931585 59C18orf62; LOC339298; TSHZ1; ZADH2; ZNF407; ZNF516; show
TSHZ2_cluster 324 chr20:50980751-52105849 18TSHZ2; ZFP64; show
TSHZ3_cluster 263 chr19:30379760-32757968 96CCNE1; DKFZp566F0947; THEG5; TSHZ3; URI1; ZNF507; ZNF536; show
 
36ZFHX3_cluster 207 chr16:72407110-73979963 31HTA; LOC100506172; PMFBP1; PSMD7; ZFHX3; show
ZFHX4_cluster 550 chr8:76571590-79007456 79HNF4G; LOC100192378; PEX2; PKIA; ZFHX4; show
 
37ZIC1_cluster 365 chr3:146465402-148087313 27AGTR1; PLSCR5; ZIC1; ZIC4; show
ZIC3_cluster 608 chrX:136317153-137065062 5GPR101; LOC158696; ZIC3; show
 
38ZIC2_cluster 153 chr13:100340118-101175755 12CLYBL; PCCA; ZIC2; ZIC5; show
ZIC3_cluster 608 chrX:136317153-137065062 5GPR101; LOC158696; ZIC3; show
 
39ZNF423_cluster 200 chr16:49623295-49736168 4ZNF423; show
ZNF521_cluster 237 chr18:22208218-24267219 40KCTD1; LOC728606; LOC729950; PSMA8; SS18; TAF4B; ZNF521; show
 
40ZNF503_cluster 74 chr10:76178168-78737914 60ADK; C10orf11; COMTD1; DUPD1; DUSP13; KAT6B; KCNMA1; SAMD8; VDAC2; ZNF503; ZNF503-AS1; ZNF503-AS2; show
ZNF703_cluster 565 chr8:36737648-37378660 8KCNU1; ZNF703; show