Below is a list of Ultraconserved Non-Coding Elements (UCNEs) that reside on the chromosome chr3 in the Human genome (hg19 assembly).

UCNE nameUCNE IDPositionTypeLength Overlapping geneUpstream geneDownstream geneParalogs
chr3_Ada 23112 chr3:2698932-2699209 intron 278CNTN4
chr3_Amos 23153 chr3:11598002-11598246 UTR3 245VGLL4
SATB1_Abraham 23188 chr3:17327663-17327877 intron 215TBC1D5
SATB1_Achilles 23191 chr3:17380638-17380910 intron 273TBC1D5
SATB1_Alexander 23197 chr3:17395904-17396180 intron 277TBC1D5
SATB1_Amadeus 23199 chr3:17422174-17422429 intron 256TBC1D5
SATB1_Antigone 23203 chr3:17448567-17448809 intron 243TBC1D5
SATB1_Bryan 23206 chr3:17511008-17511339 intron 332TBC1D5
SATB1_Cameron 23210 chr3:17547890-17548163 intron 274TBC1D5
SATB1_Carmen 23215 chr3:17592616-17593324 UTR3 709TBC1D5
SATB1_Cassandra 23216 chr3:17608773-17609212 UTR3 440TBC1D5
SATB1_Charlie 23217 chr3:17619292-17619951 UTR3 660TBC1D5
SATB1_Derek 23220 chr3:17665856-17666072 UTR3 217TBC1D5
SATB1_Eduardo 23225 chr3:17878430-17878693 intergenic 264TBC1D5SATB1
SATB1_Eros 23227 chr3:17953374-17953812 intergenic 439TBC1D5SATB1
SATB1_Evelyn_1 23228 chr3:17976363-17976579 intergenic 217TBC1D5SATB1
SATB1_Evelyn_2 23229 chr3:17976585-17977042 intergenic 458TBC1D5SATB1
SATB1_Flora 23232 chr3:17979425-17979632 intergenic 208TBC1D5SATB1
SATB1_Frederica 23237 chr3:17987989-17988397 intergenic 409TBC1D5SATB1
SATB1_Jan 23247 chr3:18074908-18075154 intergenic 247TBC1D5SATB1
SATB1_Jeremy 23252 chr3:18169544-18170021 intergenic 478TBC1D5SATB1
SATB1_Jonathan 23256 chr3:18231239-18231505 intergenic 267TBC1D5SATB1
SATB1_Lily 23263 chr3:18389426-18390036 UTR5 611SATB1chr6:121900935-121901040;
SATB1_Mauritius 23271 chr3:18399490-18399691 intron 202SATB1
SATB1_Maxwell 23273 chr3:18411043-18411731 intron 689SATB1
SATB1_Ming 23274 chr3:18412313-18412580 intron 268SATB1
SATB1_Quentin 23275 chr3:18418160-18418521 intron 362SATB1
SATB1_Roxane 23284 chr3:18444342-18444928 intron 587SATB1
SATB1_Ryan 23286 chr3:18456736-18457000 intron 265SATB1
SATB1_Sam 23293 chr3:18460864-18461428 intron 565SATB1
SATB1_Santiago 23298 chr3:18476757-18477030 UTR3 274SATB1
SATB1_Scheherazade 23299 chr3:18477169-18477378 UTR3 210SATB1
SATB1_Tarzan 23307 chr3:18700086-18700328 intergenic 243SATB1KCNH8
SATB1_Tatiana 23308 chr3:18795220-18795431 intergenic 212SATB1KCNH8
SATB1_Veronica 23310 chr3:18844485-18844745 intergenic 261SATB1KCNH8
SATB1_Vivien 23311 chr3:18898805-18899541 intergenic 737SATB1KCNH8
SATB1_Vladimir 23312 chr3:18916864-18917319 intergenic 456SATB1KCNH8
SATB1_Wagner 23317 chr3:19028392-19028780 intergenic 389SATB1KCNH8chr16:80424016-80424132;
SATB1_Xavier 23318 chr3:19034153-19034380 intergenic 228SATB1KCNH8
chr3_Beatrice 23363 chr3:24790149-24790387 intergenic 239THRBRARB
RARB_Andrew 23375 chr3:25322831-25323167 intergenic 337THRBRARB
RARB_Lolita 23376 chr3:25333095-25333307 intergenic 213THRBRARB
RARB_Midori 23378 chr3:25359733-25360128 intergenic 396THRBRARB
RARB_Victor 23385 chr3:25477831-25478042 UTR5 212RARB
chr3_Boris 23418 chr3:28307181-28307508 intron 328CMC1
chr3_Chen 23499 chr3:41236428-41236706 intergenic 279ZNF621CTNNB1
WNT5A_Carmen 23611 chr3:55278378-55278661 intergenic 284CACNA2D3WNT5A
WNT5A_Harper 23616 chr3:55552530-55552732 UTR5 203ERC2
WNT5A_Midori 23622 chr3:55789539-55790027 intron 489ERC2
chr3_Eden 23648 chr3:57914677-57914894 UTR3 218SLMAPchr2:15658543-15658738;
chr3_Eduardo 23655 chr3:59293242-59293535 intergenic 294C3orf67FHIT
FHIT_Julia 23663 chr3:60183985-60184280 intron 296FHIT
FHIT_Tatiana 23664 chr3:60275157-60275399 intron 243FHIT
FHIT_Veronica 23665 chr3:60301843-60302093 intron 251FHIT
CADPS_Amanda 23693 chr3:62278983-62279272 UTR3 290PTPRG
CADPS_Hannibal 23697 chr3:62320135-62320348 intergenic 214C3orf14FEZF2
CADPS_Leopold 23709 chr3:62401827-62402032 intron 206CADPS
CADPS_Vera 23711 chr3:62407040-62407290 intron 251CADPS
chr3_Elvira 23766 chr3:67857198-67857413 intergenic 216SUCLG2FAM19A1
FOXP1_Sherlock 23790 chr3:70091768-70092178 intergenic 411MITFFOXP1chr7:115319239-115319418;
FOXP1_Siddhartha 23792 chr3:70115122-70115451 intergenic 330MITFFOXP1
FOXP1_Roxane 23794 chr3:70125524-70126095 intergenic 572MITFFOXP1
FOXP1_Robert 23808 chr3:70326543-70326744 intergenic 202MITFFOXP1
FOXP1_Prometheus 23814 chr3:70566393-70566718 intergenic 326MITFFOXP1
FOXP1_Othell 23815 chr3:70572735-70573131 intergenic 397MITFFOXP1
FOXP1_Noah 23828 chr3:70778754-70779008 intergenic 255MITFFOXP1
FOXP1_Napoleon 23831 chr3:70791965-70792171 intergenic 207MITFFOXP1
FOXP1_Mustafa 23834 chr3:70851595-70851834 intergenic 240MITFFOXP1
FOXP1_Lucifer 23837 chr3:70871682-70872348 intergenic 667MITFFOXP1
FOXP1_Kizuki 23845 chr3:71001548-71001858 intergenic 311MITFFOXP1
FOXP1_Kaori 23856 chr3:71009205-71009436 intron 232FOXP1chr7:114328738-114328962;
FOXP1_Julia 23860 chr3:71019533-71019846 intron 314FOXP1
FOXP1_Jeremy 23864 chr3:71026317-71026688 intron 372FOXP1
FOXP1_Isolde 23866 chr3:71030554-71030820 intron 267FOXP1chr7:114297884-114298015;
FOXP1_Isaac 23868 chr3:71034737-71035145 intron 409FOXP1
FOXP1_Gandalf 23870 chr3:71035977-71036343 intron 367FOXP1
FOXP1_Frederica 23873 chr3:71052586-71053015 intron 430FOXP1chr7:114289352-114289743;
FOXP1_Franz_1 23874 chr3:71053585-71053784 intron 200FOXP1
FOXP1_Franz_2 23875 chr3:71053787-71054127 intron 341FOXP1
FOXP1_Florentino 23877 chr3:71055492-71055753 intron 262FOXP1
FOXP1_Flora 23887 chr3:71091893-71092235 intron 343FOXP1
FOXP1_Fiona 23892 chr3:71096656-71096875 intron 220FOXP1
FOXP1_Finn_1 23896 chr3:71099388-71099789 intron 402FOXP1
FOXP1_Finn_2 23897 chr3:71099791-71100399 intron 609FOXP1chr7:114270320-114270722;
FOXP1_Ferguson 23899 chr3:71101825-71102078 intron 254FOXP1
FOXP1_Felix 23901 chr3:71103481-71103875 intron 395FOXP1
FOXP1_Faust 23903 chr3:71104193-71104397 intron 205FOXP1
FOXP1_Evelyn 23907 chr3:71109768-71109967 intron 200FOXP1
FOXP1_Eugene 23909 chr3:71147148-71147350 intron 203FOXP1
FOXP1_Eros 23910 chr3:71151309-71151520 intron 212FOXP1
FOXP1_Emi 23912 chr3:71154385-71154744 intron 360FOXP1chr7:114209384-114209593;
FOXP1_Doris 23917 chr3:71180687-71181058 intron 372FOXP1
FOXP1_Dominica 23921 chr3:71185369-71185885 intron 517FOXP1
FOXP1_Delphina 23922 chr3:71187854-71188111 intron 258FOXP1
FOXP1_Daniel 23928 chr3:71218423-71218642 intron 220FOXP1chr7:114073029-114073174;
FOXP1_Claudia 23929 chr3:71219451-71219728 intron 278FOXP1
FOXP1_Chen 23930 chr3:71220365-71220832 intron 468FOXP1
FOXP1_Charlie 23932 chr3:71244724-71244957 intron 234FOXP1
FOXP1_Chao 23935 chr3:71254149-71254563 UTR3 415FOXP1
FOXP1_Brooklyn_2 23943 chr3:71290771-71291071 UTR3 301FOXP1chr7:114057424-114057709; chr6:41523470-41523578;
FOXP1_Brooklyn_1 23944 chr3:71291978-71292192 UTR3 215FOXP1chr7:114057158-114057349;
FOXP1_Boris 23958 chr3:71357320-71357632 UTR3 313FOXP1
FOXP1_Atsuko 23966 chr3:71440773-71440995 UTR3 223FOXP1
FOXP1_Apollo 23967 chr3:71441602-71441817 UTR3 216FOXP1
FOXP1_Aphrodite 23968 chr3:71447789-71448216 UTR3 428FOXP1
FOXP1_Aladdin 23972 chr3:71499993-71500395 UTR3 403FOXP1
FOXP1_Aida 23974 chr3:71507907-71508420 UTR3 514FOXP1
FOXP1_Achilles 23980 chr3:71574058-71574384 UTR3 327FOXP1
chr3_Emi 23985 chr3:72423750-72424423 UTR5 674RYBPchr7:50092902-50093437;
chr3_Eugene 24026 chr3:77129440-77129766 intron 327ROBO2
chr3_Faust 24051 chr3:77644558-77644770 intron 213ROBO2
chr3_Franz 24057 chr3:77681592-77681824 intron 233ROBO2chr3:78666820-78666965; chr11:124756389-124756543;
chr3_Jan 24103 chr3:81266135-81266552 intergenic 418ROBO1GBE1
chr3_Joshua 24111 chr3:81981844-81982043 intergenic 200GBE1CADM2chr7:113520728-113520879;
chr3_Juan 24145 chr3:87037439-87037660 intron 222VGLL3
chr3_Julia 24162 chr3:89735042-89735243 intergenic 202EPHA3PROS1
chr3_Kalina 24178 chr3:96960319-96960573 intron 255EPHA6
MIR4796_Aladdin 24254 chr3:114161138-114161362 UTR3 225ZBTB20
MIR4796_Ariane 24264 chr3:114283929-114284349 UTR3 421ZBTB20
MIR4796_Ava 24269 chr3:114379032-114379334 UTR3 303ZBTB20
MIR4796_Benjamin 24273 chr3:114433463-114433778 UTR3 316ZBTB20
MIR4796_Joshua 24275 chr3:114435033-114435346 UTR3 314ZBTB20
MIR4796_Scheherazade 24282 chr3:114575462-114575767 UTR3 306ZBTB20
MIR4796_Xavier 24286 chr3:114611905-114612237 UTR3 333ZBTB20
chr3_Kaori 24319 chr3:116863070-116863286 intergenic 217LOC285194IGSF11
chr3_Kazuki 24340 chr3:119542773-119543023 UTR5 251GSK3B
SOX14_Zelda 24442 chr3:136905247-136905563 intergenic 317IL20RBSOX14
SOX14_Toru 24445 chr3:136983530-136983962 intergenic 433IL20RBSOX14chr13:95618839-95619200;
SOX14_Napoleon 24449 chr3:137002395-137002623 intergenic 229IL20RBSOX14
SOX14_Maxwell 24451 chr3:137048367-137048732 intergenic 366IL20RBSOX14
SOX14_Kizuki 24453 chr3:137068310-137068638 intergenic 329IL20RBSOX14
SOX14_Faust 24455 chr3:137125616-137126031 intergenic 416IL20RBSOX14
SOX14_Emi 24457 chr3:137186295-137186496 intergenic 202IL20RBSOX14
SOX14_Aurore 24471 chr3:137412689-137413007 intergenic 319IL20RBSOX14chr13:95403182-95403371;
SOX14_Antonio 24476 chr3:137491836-137492079 intergenic 244SOX14CLDN18
chr3_Kyna 24488 chr3:138949281-138949505 intergenic 225BPESC1PISRT1
chr3_Larisa 24493 chr3:140685689-140685915 intron 227SLC25A36
ZIC1_Amadeus 24528 chr3:146465402-146465750 intergenic 349PLSCR5ZIC4
ZIC1_Ariane 24537 chr3:146693269-146693518 intergenic 250PLSCR5ZIC4
ZIC1_Ariel 24546 chr3:146956152-146956527 intergenic 376PLSCR5ZIC4
ZIC1_Arthur 24553 chr3:146975828-146976164 intergenic 337PLSCR5ZIC4
ZIC1_Ava 24554 chr3:147009767-147010016 intergenic 250PLSCR5ZIC4
ZIC1_Cassandra 24555 chr3:147013716-147013932 intergenic 217PLSCR5ZIC4
ZIC1_Elvira 24557 chr3:147030702-147031000 intergenic 299PLSCR5ZIC4
ZIC1_Evelyn 24560 chr3:147049528-147050017 intergenic 490PLSCR5ZIC4
ZIC1_Figaro 24572 chr3:147096838-147097037 intergenic 200PLSCR5ZIC4
ZIC1_Florentino 24591 chr3:147133011-147133243 UTR3 233ZIC1
ZIC1_Franz 24592 chr3:147167573-147167804 intergenic 232ZIC1AGTR1
ZIC1_Gwyneth 24603 chr3:147336469-147336843 intergenic 375ZIC1AGTR1
ZIC1_Isaac 24604 chr3:147379199-147379481 intergenic 283ZIC1AGTR1
ZIC1_Isolde 24605 chr3:147380074-147380315 intergenic 242ZIC1AGTR1
ZIC1_Julia 24606 chr3:147393473-147393750 intergenic 278ZIC1AGTR1
ZIC1_Kazuki 24608 chr3:147417250-147417495 intergenic 246ZIC1AGTR1
ZIC1_Kizuki 24617 chr3:147652154-147652364 intergenic 211ZIC1AGTR1
ZIC1_Mauritius 24619 chr3:147652650-147652889 intergenic 240ZIC1AGTR1
ZIC1_Nagasawa 24622 chr3:147748506-147748829 intergenic 324ZIC1AGTR1
ZIC1_Olivia 24625 chr3:147792838-147793059 intergenic 222ZIC1AGTR1
ZIC1_Patricia 24626 chr3:147793398-147793991 intergenic 594ZIC1AGTR1
ZIC1_Prometheus 24629 chr3:147801382-147801903 intergenic 522ZIC1AGTR1
ZIC1_Scheherazade_1 24642 chr3:147964207-147964576 intergenic 370ZIC1AGTR1
ZIC1_Scheherazade_2 24643 chr3:147964605-147964826 intergenic 222ZIC1AGTR1
ZIC1_Toru 24645 chr3:148006919-148007173 intergenic 255ZIC1AGTR1
ZIC1_Urania 24647 chr3:148048922-148049162 intergenic 241ZIC1AGTR1
ZIC1_Vanessa 24648 chr3:148087099-148087313 intergenic 215ZIC1AGTR1
MBNL1_Arthur 24667 chr3:152173180-152173417 intron 201MBNL1
MBNL1_Carmen 24671 chr3:152180486-152180706 UTR3 221MBNL1
MBNL1_Nick 24674 chr3:152182140-152182421 UTR3 282MBNL1
MBNL1_Othell 24676 chr3:152182573-152182842 UTR3 270MBNL1
chr3_Laura 24695 chr3:156874699-156874926 intron 228CCNL1
SHOX2_Aida 24700 chr3:157574121-157574392 intergenic 272C3orf55SHOX2
SHOX2_Alice 24702 chr3:157589867-157590076 intergenic 210C3orf55SHOX2
SHOX2_Amos 24703 chr3:157638527-157638817 intergenic 291C3orf55SHOX2
SHOX2_Andrew 24706 chr3:157776198-157776799 intergenic 602C3orf55SHOX2chrX:751583-751678; chrY:701583-701678;
SHOX2_Aphrodite 24708 chr3:157779746-157780196 intergenic 451C3orf55SHOX2
SHOX2_Ariel 24709 chr3:157851208-157851917 intron 710RSRC1
SHOX2_Aurore 24711 chr3:157882886-157883388 intron 503RSRC1
SHOX2_Dominica 24713 chr3:157883551-157883759 intron 209RSRC1
SHOX2_Emi 24714 chr3:157903653-157904233 intron 581RSRC1
SHOX2_Faust 24718 chr3:157951714-157951944 intron 231RSRC1
SHOX2_Franz 24720 chr3:157989982-157990248 intron 267RSRC1
SHOX2_Harper 24721 chr3:158009969-158010191 intron 223RSRC1chrX:433506-433625; chrY:383506-383625;
SHOX2_Joshua_1 24724 chr3:158026060-158026456 intron 397RSRC1
SHOX2_Joshua_2 24725 chr3:158026458-158027096 intron 639RSRC1
SHOX2_Ryan 24729 chr3:158103460-158103797 intron 338RSRC1
SHOX2_Ursula 24735 chr3:158149815-158150182 intron 368RSRC1
SHOX2_Vanessa 24738 chr3:158177947-158178215 intron 269RSRC1
SHOX2_Veronica 24742 chr3:158201781-158202140 intron 360RSRC1
SHOX2_Vincent 24743 chr3:158245916-158246256 intron 341RSRC1
chr3_Lucifer 24748 chr3:160217966-160218330 UTR5 365KPNA4chr6:86002380-86002737; chrX:63523151-63523509; chr4:38590417-38590593; chr7:45157542-45157613;
chr3_Olivia 24754 chr3:160219590-160219803 UTR5 214KPNA4chrX:63524532-63524745; chr6:86000930-86001149;
chr3_Pandora 24767 chr3:167401764-167401989 UTR5 226PDCD10chr8:51772722-51772941; chr9:88329514-88329689;
MECOM_Aladdin 24775 chr3:168706620-168706860 intergenic 241C3orf50MECOM
MECOM_Cassandra 24803 chr3:168913563-168913785 intron 223MECOM
MECOM_Doris 24810 chr3:168960322-168960637 intron 316MECOM
MECOM_Eden 24811 chr3:168961115-168961327 intron 213MECOM
MECOM_Faust 24819 chr3:169058062-169058288 intron 227MECOM
MECOM_Figaro 24820 chr3:169060768-169061119 intron 352MECOM
MECOM_Gabriel 24825 chr3:169072690-169072979 intron 290MECOM
MECOM_Haruki 24832 chr3:169082343-169082668 intron 326MECOM
MECOM_Jasmine 24837 chr3:169153008-169153387 intron 380MECOMchr1:3086374-3086625;
MECOM_Joshua 24838 chr3:169166931-169167324 intron 394MECOM
MECOM_Juan 24841 chr3:169170990-169171210 intron 221MECOM
MECOM_Leontina 24842 chr3:169171298-169171698 intron 401MECOM
MECOM_Nemo 24843 chr3:169175778-169175980 intron 203MECOM
MECOM_Nora 24847 chr3:169193752-169194276 intron 525MECOMchr1:3057990-3058116;
MECOM_Scarlett 24849 chr3:169195695-169195928 intron 234MECOM
MECOM_Sebastian 24851 chr3:169223773-169224146 intron 374MECOM
MECOM_Tatiana 24854 chr3:169291775-169292616 intron 842MECOMchr2:33045438-33045552;
MECOM_Trevor 24857 chr3:169296935-169297256 intron 322MECOMchr1:3017828-3018036;
MECOM_Vanessa 24864 chr3:169325742-169326034 intron 293MECOM
chr3_Patricia 24909 chr3:173778888-173779165 intron 278NLGN1
chr3_Poseidon 24920 chr3:174000517-174000767 UTR3 251NLGN1
SOX2_Achilles 24957 chr3:180436793-180437382 intergenic 590CCDC39FXR1
SOX2_Aida 24960 chr3:180461919-180462709 intergenic 791CCDC39FXR1
SOX2_Aladdin_1 24963 chr3:180694091-180694362 UTR3 272FXR1chr12:42825191-42825457; chr21:24991012-24991246;
SOX2_Aladdin_2 24964 chr3:180694391-180694638 UTR3 248FXR1chr12:42824919-42825164;
SOX2_Aladdin_3 24965 chr3:180694650-180694849 UTR3 200FXR1chr12:42824708-42824907;
SOX2_Apollo 24967 chr3:180773963-180774598 intergenic 636DNAJC19SOX2OTchr13:112037577-112037846;
SOX2_Cameron 24969 chr3:180892217-180892916 intergenic 700DNAJC19SOX2OTchr13:112063188-112063435;
SOX2_Cassandra 24970 chr3:180957080-180957282 intergenic 203DNAJC19SOX2OT
SOX2_Chao 24973 chr3:180970494-180970904 intergenic 411DNAJC19SOX2OT
SOX2_Charlie 24975 chr3:181020674-181021011 intergenic 338DNAJC19SOX2OT
SOX2_Franz 24977 chr3:181022376-181022578 intergenic 203DNAJC19SOX2OT
SOX2_Frederica 24982 chr3:181097179-181097613 intergenic 435DNAJC19SOX2OT
SOX2_Hamlet 24983 chr3:181135579-181135903 intergenic 325DNAJC19SOX2OT
SOX2_Hannibal 24984 chr3:181160651-181160881 intergenic 231DNAJC19SOX2OT
SOX2_Hong 24985 chr3:181173799-181174012 intergenic 214DNAJC19SOX2OT
SOX2_Jacob 24990 chr3:181176688-181177047 intergenic 360DNAJC19SOX2OT
SOX2_Julia 24992 chr3:181215128-181215514 intergenic 387DNAJC19SOX2OT
SOX2_Kizuki 24993 chr3:181252644-181253196 intergenic 553DNAJC19SOX2OT
SOX2_Logan_1 24994 chr3:181278959-181279186 intergenic 228DNAJC19SOX2OT
SOX2_Logan_2 24995 chr3:181279192-181279517 intergenic 326DNAJC19SOX2OT
SOX2_Mustafa 24999 chr3:181327121-181327359 intergenic 239DNAJC19SOX2OT
SOX2_Olivia 25006 chr3:181343758-181344246 intron 489SOX2OT
SOX2_Quentin 25009 chr3:181359504-181359754 intron 251SOX2OT
SOX2_Robert 25012 chr3:181410564-181410954 intron 391SOX2OT
SOX2_Scout 25015 chr3:181418985-181419221 intron 237SOX2OT
SOX2_Sherlock 25016 chr3:181425663-181426082 intron 420SOX2OT
SOX2_Silvester 25029 chr3:181470167-181470370 intergenic 204SOX2OTATP11B
SOX2_Ursula 25044 chr3:181861419-181861639 intergenic 221SOX2OTATP11B
SOX2_Wagner 25076 chr3:182314586-182314792 intergenic 207SOX2OTATP11B
chr3_Prometheus 25096 chr3:185649295-185649725 intron 431TRA2B
chr3_Quentin 25111 chr3:188189787-188190141 intron 355LPP