Below is a list of Ultraconserved Non-Coding Elements (UCNEs) that reside on the chromosome chr9 in the Human genome (hg19 assembly).

UCNE nameUCNE IDPositionTypeLength Overlapping geneUpstream geneDownstream geneParalogs
DMRT2_Daniel 34115 chr9:927217-927473 intron 257DMRT1
DMRT2_Faust 34118 chr9:969140-969515 intergenic 376DMRT1DMRT3
DMRT2_Jun 34134 chr9:1320108-1320417 intergenic 310DMRT2SMARCA2
chr9_Abraham 34143 chr9:2159675-2159987 intron 313SMARCA2
chr9_Benjamin 34150 chr9:3218488-3218796 intergenic 309KIAA0020RFX3chrX:71047250-71047533; chrX:71030739-71030947;
PTPRD_Aladdin 34188 chr9:8095704-8095965 intergenic 262C9orf123PTPRD
PTPRD_Hana 34201 chr9:8523419-8523650 intron 219PTPRDchr19:5256085-5256239;
PTPRD_Leopold 34205 chr9:8526544-8526809 intron 247PTPRD
NFIB_Achilles 34238 chr9:14082258-14082501 UTR5 244NFIB
NFIB_Aladdin 34246 chr9:14083899-14084136 UTR5 238NFIB
NFIB_Boris 34252 chr9:14086372-14086674 UTR5 303NFIB
NFIB_Evelyn 34260 chr9:14096522-14096951 intron 430NFIBchr1:61918858-61919037; chr19:13202340-13202434;
NFIB_Figaro 34263 chr9:14116160-14116366 intron 207NFIB
NFIB_Hannibal 34269 chr9:14203306-14203547 intron 242NFIB
NFIB_Leontina 34270 chr9:14209395-14209641 intron 247NFIB
NFIB_Mauritius 34278 chr9:14271243-14271511 intron 269NFIB
NFIB_Prometheus 34283 chr9:14303599-14303816 intron 218NFIB
NFIB_Urania 34287 chr9:14307982-14308186 intron 205NFIB
BNC2_Adela 34313 chr9:15728035-15728377 intron 343C9orf93
BNC2_Akiko 34315 chr9:15776999-15777247 intron 249C9orf93
BNC2_Aladdin 34316 chr9:15843495-15844159 intron 665C9orf93
BNC2_Amos 34321 chr9:15872547-15872834 intron 288C9orf93
BNC2_Antonio 34322 chr9:15874321-15874528 intron 208C9orf93
BNC2_Ariane 34326 chr9:15936650-15936880 intron 231C9orf93
BNC2_Boris 34328 chr9:15972043-15972508 intergenic 466C9orf93BNC2
BNC2_Brooklyn 34329 chr9:15972695-15973110 intergenic 416C9orf93BNC2
BNC2_Bryan 34333 chr9:16192608-16192879 intergenic 272C9orf93BNC2
BNC2_Claudia 34336 chr9:16268278-16268598 intergenic 321C9orf93BNC2
BNC2_Daniel 34337 chr9:16278433-16278696 intergenic 264C9orf93BNC2
BNC2_Demian 34342 chr9:16412824-16413103 UTR5 280BNC2
BNC2_Emi_1 34350 chr9:16427161-16427377 intron 217BNC2
BNC2_Emi_2 34351 chr9:16427401-16427613 intron 213BNC2
BNC2_Felix 34352 chr9:16427901-16428258 intron 358BNC2
BNC2_Florentino 34356 chr9:16449168-16449581 intron 414BNC2
BNC2_Hector 34361 chr9:16515484-16515700 intron 217BNC2
BNC2_Helen 34365 chr9:16522202-16522539 intron 338BNC2
BNC2_Isaac 34371 chr9:16571516-16571898 intron 383BNC2
BNC2_Jeremy 34374 chr9:16597250-16597532 intron 283BNC2
BNC2_Johanna 34380 chr9:16651559-16651799 intron 241BNC2
BNC2_Jonathan 34381 chr9:16653715-16653916 intron 202BNC2
BNC2_Julia 34383 chr9:16679451-16679664 intron 214BNC2
BNC2_Kazuki 34384 chr9:16681336-16681580 intron 245BNC2
BNC2_Laura 34385 chr9:16681695-16681901 intron 207BNC2
BNC2_Lucifer 34387 chr9:16705168-16705430 intron 263BNC2
BNC2_Lucy 34388 chr9:16708793-16709032 intron 240BNC2
BNC2_Mateo 34389 chr9:16710752-16711096 intron 345BNC2
BNC2_Ming 34391 chr9:16723794-16724027 intron 234BNC2
BNC2_Nagasawa 34393 chr9:16728118-16728338 intron 221BNC2
BNC2_Napoleon 34397 chr9:16730126-16730620 intron 495BNC2
BNC2_Noah 34402 chr9:16772792-16773204 intron 413BNC2
BNC2_Ophelia 34405 chr9:16803477-16804040 intron 564BNC2
BNC2_Roman 34407 chr9:16825355-16825592 intron 238BNC2
BNC2_Scheherazade 34409 chr9:16828485-16828926 intron 442BNC2
BNC2_Siddhartha 34413 chr9:16864790-16865031 intron 242BNC2
BNC2_Toru 34415 chr9:17217331-17217634 intron 304CNTLN
BNC2_Trystan 34419 chr9:17323176-17324089 intron 914CNTLN
BNC2_Vincent 34420 chr9:17332046-17332329 intron 284CNTLN
BNC2_Violet 34422 chr9:17342656-17343018 intron 363CNTLN
BNC2_Wei 34424 chr9:17395278-17395607 intron 330CNTLN
BNC2_William 34429 chr9:17450435-17450645 intron 211CNTLN
BNC2_Zeus 34431 chr9:17487355-17487696 intron 342CNTLN
chr9_Cameron 34477 chr9:23842954-23843176 intergenic 223ELAVL2TUSC1
chr9_Cassandra 34484 chr9:24608676-24608943 intergenic 268ELAVL2TUSC1
chr9_Charlie 34493 chr9:26800949-26801182 intergenic 234TUSC1C9orf82
PAX5_Mateo 34556 chr9:36978914-36979137 intron 224PAX5chr10:102563683-102563879;
PAX5_Lucia 34563 chr9:37179437-37179792 intron 356ZCCHC7
PAX5_Gandalf 34567 chr9:37215008-37215466 intron 459ZCCHC7chr10:102447771-102447989;
PAX5_Frodo 34569 chr9:37251457-37251805 intron 349ZCCHC7
PAX5_Frankenstein 34570 chr9:37283941-37284173 intron 233ZCCHC7
PAX5_Faust 34571 chr9:37324179-37324609 intron 431ZCCHC7
PAX5_Elvira 34572 chr9:37324817-37325035 intron 219ZCCHC7
PAX5_Cameron 34573 chr9:37327575-37327833 intron 222ZCCHC7
PAX5_Aurore 34576 chr9:37337413-37337780 intron 368ZCCHC7
PAX5_Amos 34578 chr9:37340030-37340404 intron 375ZCCHC7
chr9_Daniel 34618 chr9:74969652-74969856 UTR5 205ZFAND5chr6:56196785-56196915; chr6:165380137-165380316;
ANXA1_Kazuki 34624 chr9:76041203-76041520 intergenic 318ANXA1RORB
ANXA1_Lucy 34626 chr9:76184129-76184437 intergenic 309ANXA1RORB
ANXA1_Scout 34630 chr9:76192863-76193125 intergenic 263ANXA1RORB
ANXA1_Wagner 34637 chr9:76232624-76232833 intergenic 210ANXA1RORB
chr9_Delphina 34640 chr9:76462596-76462802 intergenic 207ANXA1RORB
chr9_Dominica 34644 chr9:76698528-76699078 intergenic 551ANXA1RORB
FOXB2_Eduardo 34674 chr9:79417069-79417409 intron 341PRUNE2
FOXB2_Eva 34681 chr9:79627874-79628150 intergenic 277PRUNE2FOXB2chr15:60285846-60286092; chr11:89831102-89831229;
TLE4_Adam 34694 chr9:81012576-81012825 intergenic 250PSAT1TLE4
TLE4_Agamemnon 34695 chr9:81053018-81053320 intergenic 303PSAT1TLE4
TLE4_Alice 34696 chr9:81063974-81064452 intergenic 479PSAT1TLE4chr9:85376080-85376313;
TLE4_Aphrodite 34698 chr9:81140978-81141347 intergenic 370PSAT1TLE4
TLE4_Ariane 34703 chr9:81246327-81246800 intergenic 474PSAT1TLE4
TLE4_Arthur 34705 chr9:81293887-81294092 intergenic 206PSAT1TLE4
TLE4_Atsuko 34708 chr9:81454248-81454517 intergenic 270PSAT1TLE4
TLE4_Aurore 34711 chr9:81472394-81472722 intergenic 329PSAT1TLE4
TLE4_Benjamin 34713 chr9:81554434-81554651 intergenic 218PSAT1TLE4
TLE4_Boris 34716 chr9:81643697-81643912 intergenic 216PSAT1TLE4
TLE4_Charlie 34718 chr9:81726575-81727031 intergenic 457PSAT1TLE4
TLE4_Chen 34725 chr9:81871567-81872032 intergenic 466PSAT1TLE4chr9:83579387-83579557;
TLE4_Demian 34729 chr9:82010620-82011043 intergenic 424PSAT1TLE4
TLE4_Eden 34732 chr9:82092982-82093184 intergenic 203PSAT1TLE4
TLE4_Evelyn 34737 chr9:82193541-82193745 intron 205TLE4
TLE4_Gwyneth 34739 chr9:82194765-82195194 intron 430TLE4chr9:83814557-83814814; chr9:84288992-84289183;
TLE4_Hong 34742 chr9:82224973-82225214 intron 242TLE4
TLE4_Jan 34747 chr9:82245983-82246436 intron 454TLE4
TLE4_Jeremy 34748 chr9:82266344-82266736 intron 393TLE4
TLE4_Jonathan 34754 chr9:82283660-82283896 intron 237TLE4
chr9_Figaro 34765 chr9:82432778-82433004 intergenic 227TLE4TLE1
TLE4_Juan 34769 chr9:82591487-82591768 intergenic 282TLE4TLE1
TLE4_Laura 34772 chr9:82681709-82682202 intergenic 494TLE4TLE1
TLE4_Lincoln 34784 chr9:83122781-83123072 intergenic 292TLE4TLE1
TLE4_Logan 34785 chr9:83413219-83413557 intergenic 339TLE4TLE1
TLE4_Lolita 34787 chr9:83712139-83712437 intergenic 299TLE4TLE1
TLE4_Lukas 34788 chr9:83727846-83728086 intergenic 241TLE4TLE1
TLE4_Napoleon_1 34792 chr9:84009894-84010301 intergenic 408TLE4TLE1
TLE4_Napoleon_2 34793 chr9:84010329-84010647 intergenic 319TLE4TLE1
TLE4_Oberon 34801 chr9:84167652-84167945 intergenic 294TLE4TLE1
TLE4_Pablo 34810 chr9:84265672-84265935 intron 264TLE1
TLE4_Robert 34814 chr9:84284811-84285052 intron 242TLE1
TLE4_Ryan 34816 chr9:84298154-84298450 intron 297TLE1
TLE4_Scheherazade 34822 chr9:84438519-84438862 intergenic 344TLE1FLJ43950
TLE4_Sherlock 34828 chr9:84890341-84890556 intergenic 216FAM75BRASEF
TLE4_Tarzan_1 34835 chr9:85103521-85103822 intergenic 302FAM75BRASEF
TLE4_Tarzan_2 34836 chr9:85103824-85104082 intergenic 259FAM75BRASEF
TLE4_Trystan 34841 chr9:85227913-85228232 intergenic 320FAM75BRASEF
TLE4_Urania 34842 chr9:85283576-85283906 intergenic 331FAM75BRASEF
TLE4_Ursula 34848 chr9:85376315-85376515 intergenic 201FAM75BRASEF
TLE4_Vanessa 34849 chr9:85396865-85397082 intergenic 218FAM75BRASEF
TLE4_Victor 34850 chr9:85509932-85510486 intergenic 555FAM75BRASEF
chr9_Harold 34858 chr9:86589882-86590746 intron 820HNRNPKchr5:14877670-14877774; chr20:29862783-29862881;
GAS1_Aurore 34872 chr9:89491760-89492040 intergenic 281ZCCHC6GAS1
GAS1_Chao 34873 chr9:89517879-89518121 intergenic 243ZCCHC6GAS1
GAS1_Hector 34877 chr9:89555886-89556116 intergenic 231ZCCHC6GAS1
chr9_Havana 34905 chr9:96326883-96327277 UTR3 395FAM120Achr3:43079003-43079397; chr8:132939033-132939252;
chr9_Julia 34907 chr9:96327433-96327835 UTR3 403FAM120Achr3:43079545-43079951; chr8:132938220-132938567; chr8:13512259-13512422; chrX:119451992-119452079;
chr9_Jun 34934 chr9:98258545-98258794 UTR3 250PTCH1
chr9_Leo 34959 chr9:102930683-102930939 intron 257INVS
chr9_Lily 34973 chr9:108673152-108673411 intergenic 260TMEM38BZNF462
chr9_Lucifer 34974 chr9:108673414-108673651 intergenic 238TMEM38BZNF462
chr9_Mauritius 34994 chr9:109683755-109683954 UTR5 200ZNF462
chr9_Napoleon 35026 chr9:116727269-116727545 intron 277ZNF618
chr9_Oliver 35078 chr9:121219985-121220237 intergenic 253TLR4DBC1
chr9_Penelope 35140 chr9:125607250-125607502 intergenic 253PDCLRC3H2
LHX2_Chen 35178 chr9:126504530-126504837 intron 308DENND1A
LHX2_Daniel 35184 chr9:126538994-126539305 intron 312DENND1A
LHX2_Hans 35186 chr9:126539490-126539701 intron 212DENND1A
LHX2_Kazuki 35189 chr9:126551781-126552200 intron 420DENND1A
LHX2_Logan 35190 chr9:126554797-126555050 intron 209DENND1A
LHX2_Lucifer 35193 chr9:126623636-126623893 intron 258DENND1A
LHX2_Nora 35209 chr9:127123853-127124079 intron 227PSMB7
LHX2_Robert 35213 chr9:127140331-127140644 intron 314PSMB7
LHX2_Vanessa 35216 chr9:127147929-127148256 intron 328PSMB7
PBX3_Alice 35229 chr9:128159800-128160024 intergenic 225GAPVD1MAPKAP1
PBX3_Amadeus 35236 chr9:128232415-128232753 intron 339MAPKAP1
PBX3_Amanda 35239 chr9:128277569-128277828 intron 260MAPKAP1
PBX3_Andrew 35244 chr9:128303958-128304274 intron 317MAPKAP1
PBX3_Antonio 35247 chr9:128308067-128308267 intron 201MAPKAP1
PBX3_Ariel 35249 chr9:128311943-128312222 intron 280MAPKAP1
PBX3_Arthur 35255 chr9:128367630-128367856 UTR3 227MAPKAP1
PBX3_Atsuko 35256 chr9:128396065-128396621 UTR3 557MAPKAP1
PBX3_Benjamin 35257 chr9:128406769-128407157 UTR3 389MAPKAP1
PBX3_Carmen 35260 chr9:128414530-128414793 UTR3 264MAPKAP1
PBX3_Chao 35261 chr9:128432187-128432761 UTR3 575MAPKAP1
PBX3_Claudia 35264 chr9:128457564-128457785 UTR3 222MAPKAP1
PBX3_Delphina 35267 chr9:128517587-128517954 intron 368PBX3
PBX3_Dominica 35269 chr9:128521817-128522275 intron 459PBX3
PBX3_Doris 35272 chr9:128524704-128525115 intron 412PBX3
PBX3_Felix 35273 chr9:128525747-128526135 intron 389PBX3
PBX3_Florentino 35276 chr9:128533107-128533478 intron 372PBX3
PBX3_Frankenstein 35281 chr9:128592111-128592350 intron 240PBX3
PBX3_Frederica 35282 chr9:128605835-128606268 intron 434PBX3
PBX3_Frodo 35286 chr9:128607645-128608024 intron 380PBX3
PBX3_Griselda 35287 chr9:128613090-128613368 intron 279PBX3
PBX3_Hector 35291 chr9:128618812-128619109 intron 298PBX3
PBX3_Helen 35294 chr9:128645994-128646517 intron 524PBX3chr1:164700923-164701054;
PBX3_Jacob 35296 chr9:128647742-128648028 intron 287PBX3
PBX3_Jasmine 35297 chr9:128648670-128648898 intron 229PBX3
PBX3_Leontina 35300 chr9:128654834-128655156 intron 323PBX3
PBX3_Leopold 35301 chr9:128656801-128657284 intron 484PBX3
PBX3_Logan 35304 chr9:128662542-128662786 intron 245PBX3
PBX3_Lucy 35305 chr9:128666801-128667203 intron 403PBX3
PBX3_Malcolm 35306 chr9:128672479-128672885 intron 407PBX3
PBX3_Nagasawa 35311 chr9:128685123-128685430 intron 308PBX3
PBX3_Nick 35312 chr9:128719505-128719819 intron 315PBX3
PBX3_Penelope 35315 chr9:128726116-128726635 intron 520PBX3
PBX3_Roxane 35321 chr9:128735466-128735774 intergenic 309PBX3FAM125B
PBX3_Sam 35333 chr9:128820081-128820547 intergenic 467PBX3FAM125B
PBX3_Silvester 35340 chr9:128869962-128870435 intergenic 474PBX3FAM125B
PBX3_Tarzan 35349 chr9:128998426-128998633 intergenic 208PBX3FAM125B
PBX3_Tatiana 35355 chr9:129191695-129191946 intron 252FAM125B
PBX3_Ursula 35358 chr9:129199596-129200315 intron 720FAM125B
PBX3_Veronica 35359 chr9:129202020-129202314 intron 295FAM125B
PBX3_Violet 35363 chr9:129224181-129224416 intron 236FAM125B
PBX3_Zeus 35365 chr9:129253147-129253379 intron 233FAM125B
chr9_Siddhartha 35402 chr9:131457472-131457819 UTR3 348SETchr3:155706493-155706831; chr10:34679756-34680094; chr12:107666120-107666466; chrX:84011529-84011876; chr1:92539229-92539565; chr5:96391240-96391583; chr14:51904824-51905171; chr2:128846682-128847014; chr5:59754844-59755179; chrX:116098149-116098487; chr14:20995401-20995742; chr3:81662742-81663077; chr17:56552651-56552991; chr17:70738803-70739113; chr1:179154346-179154704; chr3:150988456-150988793; chr2:27969033-27969365; chr2:156339535-156339859; chr8:21211231-21211561; chr3:138733245-138733511; chr11:23464641-23464980; chr2:97914056-97914387; chr2:98125022-98125353; chrUn_gl000212:3759-4090; chrX:15937092-15937465; chr2:96518438-96518769; chr2:89103070-89103401; chr1:18812220-18812474; chr13:24486227-24486535; chr9:136959843-136960061; chr14:35576151-35576378; chr18:12128528-12128776; chr14:36480266-36480448; chr22:17153621-17153869; chr4:121815766-121816065; chr20:432485-432665; chr12:44121705-44121856; chr12:78841527-78841667; chr1:160641353-160641464; chr9:140534240-140534372; chr11:118703540-118703650; chr7:142831714-142831885; chr7:99892542-99892657; chr7:72529917-72530042; chr7:74692594-74692719; chr7:74906844-74906969; chr7:74341584-74341687;
BARHL1_Haruki 35461 chr9:135495519-135495803 intron 285DDX31
BARHL1_Juan 35469 chr9:135620086-135620348 intron 263C9orf98chr1:90728868-90728999;
BARHL1_Lincoln 35477 chr9:135681517-135681718 intron 202C9orf98
BARHL1_Mauritius 35483 chr9:135745745-135745987 intron 243C9orf98