Ultraconserved Genomic Regulatory Block: SOX2_cluster
(id = 373)

General information about the entry
Representative name:SOX2_cluster
Position:chr3:180436793-182314792
# UCNEs:29
Assiciated genes:ATP11B; CCDC39; DNAJC19; FLJ46066; FXR1; SOX2; SOX2-OT;
Possible target genes:SOX2;
UCNEs forming the cluster:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Silvester; SOX2_Ursula; SOX2_Wagner;
Paralogous cluster(s):SOX1_cluster; SOX3_cluster;

View cluster image
Conservation in chicken:
Chicken (galGal3): Position: chr9:18308001-17649072
Associated genes: FXR1; SOX2;
Conservation in other species:
Mouse (mm10):
Subcluster #1

Position:
chr3:33882710-35464507
# UCNEs:28
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Ursula; SOX2_Wagner;
Opossum (monDom5):
Subcluster #1

Position:
chr7:203881882-205307527
# UCNEs:28
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Silvester; SOX2_Ursula;
Subcluster #2

Position:
chr7:205808013-205808206
# UCNEs:1
UCNEs:SOX2_Wagner;
Platypus (ornAna1):
Subcluster #1

Position:
Contig21034:8677-8912
# UCNEs:1
UCNEs:SOX2_Scout;
Subcluster #2

Position:
Contig23758:1290-1526
# UCNEs:1
UCNEs:SOX2_Mustafa;
Subcluster #3

Position:
Contig283750:205-411
# UCNEs:1
UCNEs:SOX2_Wagner;
Subcluster #4

Position:
Contig5652:5354-5556
# UCNEs:1
UCNEs:SOX2_Cassandra;
Subcluster #5

Position:
Contig8344:10527-11316
# UCNEs:1
UCNEs:SOX2_Aida;
Subcluster #6

Position:
Ultra347:265688-1086569
# UCNEs:23
UCNEs:SOX2_Achilles; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Sherlock; SOX2_Silvester;
Subcluster #7

Position:
Ultra354:256346-256566
# UCNEs:1
UCNEs:SOX2_Ursula;
Zebra_finch (taeGut1):
Subcluster #1

Position:
chr9:18983875-19663685
# UCNEs:29
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Silvester; SOX2_Ursula; SOX2_Wagner;
Lizard (anoCar2):
Subcluster #1

Position:
chr3:448643-1584996
# UCNEs:29
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Silvester; SOX2_Ursula; SOX2_Wagner;
Painted_turtle (chrPic1):
Subcluster #1

Position:
JH584502:3069325-4302565
# UCNEs:28
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Charlie; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Hong; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Ursula; SOX2_Wagner;
Xenopus (xenTro3):
Subcluster #1

Position:
GL172881:707409-1457474
# UCNEs:27
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_1; SOX2_Aladdin_2; SOX2_Aladdin_3; SOX2_Apollo; SOX2_Cameron; SOX2_Cassandra; SOX2_Chao; SOX2_Franz; SOX2_Frederica; SOX2_Hamlet; SOX2_Hannibal; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Scout; SOX2_Sherlock; SOX2_Silvester; SOX2_Ursula; SOX2_Wagner;
Fugu (fr2):
Subcluster #1

Position:
chrUn:303412708-303480105
# UCNEs:8
UCNEs:SOX2_Aida; SOX2_Apollo; SOX2_Cameron; SOX2_Frederica; SOX2_Kizuki; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia;
Subcluster #2

Position:
chrUn:368442169-368442330
# UCNEs:1
UCNEs:SOX2_Sherlock;
Subcluster #3

Position:
chrUn:373185224-373185385
# UCNEs:1
UCNEs:SOX2_Sherlock;
Medaka (oryLat2):
Subcluster #1

Position:
chr4:19857203-20016398
# UCNEs:9
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Apollo; SOX2_Cameron; SOX2_Frederica; SOX2_Logan_1; SOX2_Logan_2; SOX2_Olivia; SOX2_Sherlock;
Stickleback (gasAcu1):
Subcluster #1

Position:
chrVIII:6048430-6155090
# UCNEs:11
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Apollo; SOX2_Cameron; SOX2_Frederica; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Sherlock;
Tetraodon (tetNig2):
Subcluster #1

Position:
chr1:21669523-21740252
# UCNEs:11
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Apollo; SOX2_Cameron; SOX2_Frederica; SOX2_Kizuki; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Robert; SOX2_Sherlock;
Subcluster #2

Position:
chrUn_random:50182808-50183384
# UCNEs:1
UCNEs:SOX2_Aida;
Zebrafish (danRer7):
Subcluster #1

Position:
chr22:40035991-40568563
# UCNEs:17
UCNEs:SOX2_Achilles; SOX2_Aida; SOX2_Aladdin_2; SOX2_Apollo; SOX2_Cameron; SOX2_Frederica; SOX2_Jacob; SOX2_Julia; SOX2_Kizuki; SOX2_Logan_1; SOX2_Logan_2; SOX2_Mustafa; SOX2_Olivia; SOX2_Quentin; SOX2_Robert; SOX2_Silvester; SOX2_Wagner;