Ultraconserved Genomic Regulatory Block: PAX1_cluster
(id = 328)

General information about the entry
Representative name:PAX1_cluster
Position:chr20:20473431-21363291
# UCNEs:6
Assiciated genes:FOXA2; NKX2-2; NKX2-4; PAX1; PLK1S1; RALGAPA2; XRN2;
Possible target genes:FOXA2; NKX2-2; NKX2-4; PAX1;
UCNEs forming the cluster:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;
Paralogous cluster(s):

View cluster image
Conservation in chicken:
Chicken (galGal3): Position: chr3:3702399-3471324
Associated genes: PLK1S1; XRN2;
Conservation in other species:
Mouse (mm10):
Subcluster #1

Position:

chr2:146325178-147069451
# UCNEs:6
UCNEs:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;


Opossum (monDom5):
Subcluster #1

Position:

chr1:600384736-601041847
# UCNEs:5
UCNEs:PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;
Subcluster #2

Position:

chr1:601735592-601735986
# UCNEs:1
UCNEs:PAX1_Ariane;


Platypus (ornAna1):
Subcluster #1

Position:

chr1:35872926-35873141
# UCNEs:1
UCNEs:PAX1_Victor;
Subcluster #2

Position:

Contig19384:7015-7277
# UCNEs:1
UCNEs:PAX1_Eugene;
Subcluster #3

Position:

Ultra485:260651-791683
# UCNEs:4
UCNEs:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina;


Zebra_finch (taeGut1):
Subcluster #1

Position:

chr3:29238359-29426805
# UCNEs:6
UCNEs:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;


Lizard (anoCar2):
Subcluster #1

Position:

chr4:80766937-81365498
# UCNEs:6
UCNEs:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;


Painted_turtle (chrPic1):
Subcluster #1

Position:

JH584522:10354558-11047598
# UCNEs:6
UCNEs:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;


Xenopus (xenTro3):
Subcluster #1

Position:

GL173122:364234-785211
# UCNEs:6
UCNEs:PAX1_Ariane; PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;


Fugu (fr2):
Subcluster #1

Position:

chrUn:65916713-65977399
# UCNEs:5
UCNEs:PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;
Subcluster #2

Position:

chrUn:192526612-192526787
# UCNEs:1
UCNEs:PAX1_Victor;


Medaka (oryLat2):
Subcluster #1

Position:

chr20:12257950-12258155
# UCNEs:1
UCNEs:PAX1_Victor;
Subcluster #2

Position:

chr22:16246115-16307076
# UCNEs:3
UCNEs:PAX1_Ariel; PAX1_Bryan; PAX1_Eugene;
Subcluster #3

Position:

chr24:16268253-16268457
# UCNEs:1
UCNEs:PAX1_Victor;


Stickleback (gasAcu1):
Subcluster #1

Position:

chrXV:3901639-3970229
# UCNEs:4
UCNEs:PAX1_Ariel; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;


Tetraodon (tetNig2):
Subcluster #1

Position:

chr10:3345214-3410839
# UCNEs:4
UCNEs:PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Victor;
Subcluster #2

Position:

chrUn_random:105661923-105662184
# UCNEs:1
UCNEs:PAX1_Eugene;


Zebrafish (danRer7):
Subcluster #1

Position:

chr17:42024663-42207196
# UCNEs:5
UCNEs:PAX1_Ariel; PAX1_Bryan; PAX1_Delphina; PAX1_Eugene; PAX1_Victor;
Subcluster #2

Position:

chr20:48975010-49065915
# UCNEs:2
UCNEs:PAX1_Eugene; PAX1_Victor;