Ultraconserved Genomic Regulatory Block: PRDM13_cluster
(id = 487)

General information about the entry
Representative name:PRDM13_cluster
Position:chr6:100197678-101060416
# UCNEs:9
Assiciated genes:ASCC3; LOC728012; MCHR2; PRDM13; SIM1;
Possible target genes:PRDM13; SIM1;
UCNEs forming the cluster:PRDM13_Brooklyn; PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;
Paralogous cluster(s):

View cluster image
Conservation in chicken:
Chicken (galGal3): Position: chr3:74015816-73557735
Associated genes: CCNC; HACE1;
Conservation in other species:
Mouse (mm10):
Subcluster #1

Position:

chr10:50743535-51257731
# UCNEs:8
UCNEs:PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;
Subcluster #2

Position:

chr4:21532354-21532586
# UCNEs:1
UCNEs:PRDM13_Brooklyn;


Opossum (monDom5):
Subcluster #1

Position:

chr2:361657601-361657834
# UCNEs:1
UCNEs:PRDM13_Brooklyn;
Subcluster #2

Position:

chr2:362221816-362729206
# UCNEs:8
UCNEs:PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;


Platypus (ornAna1):
Subcluster #1

Position:

Ultra542:2179403-2587311
# UCNEs:9
UCNEs:PRDM13_Brooklyn; PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;


Zebra_finch (taeGut1):
Subcluster #1

Position:

chr3:73148607-73579834
# UCNEs:9
UCNEs:PRDM13_Brooklyn; PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;


Lizard (anoCar2):
Subcluster #1

Position:

chr1:171040793-171515671
# UCNEs:9
UCNEs:PRDM13_Brooklyn; PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;


Painted_turtle (chrPic1):
Subcluster #1

Position:

JH584525:11982230-12725293
# UCNEs:9
UCNEs:PRDM13_Brooklyn; PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;


Xenopus (xenTro3):
Subcluster #1

Position:

GL172655:525926-892808
# UCNEs:9
UCNEs:PRDM13_Brooklyn; PRDM13_Bryan; PRDM13_Elvira; PRDM13_Hamlet; PRDM13_Lucia; PRDM13_Lucy; PRDM13_Ruby; PRDM13_Urania; PRDM13_Virginia;


Fugu (fr2):
Subcluster #1

Position:

chrUn:167755692-167755875
# UCNEs:1
UCNEs:PRDM13_Lucy;
Subcluster #2

Position:

chrUn:212952973-212953161
# UCNEs:1
UCNEs:PRDM13_Brooklyn;


Medaka (oryLat2):
Subcluster #1

Position:

chr16:594845-595032
# UCNEs:1
UCNEs:PRDM13_Brooklyn;
Subcluster #2

Position:

chr24:6343455-6343617
# UCNEs:1
UCNEs:PRDM13_Lucy;


Stickleback (gasAcu1):
Subcluster #1

Position:

chrXVIII:9161668-9161850
# UCNEs:1
UCNEs:PRDM13_Lucy;
Subcluster #2

Position:

chrXX:3343382-3343592
# UCNEs:1
UCNEs:PRDM13_Brooklyn;


Tetraodon (tetNig2):
Subcluster #1

Position:

chr14:4076411-4076594
# UCNEs:1
UCNEs:PRDM13_Lucy;
Subcluster #2

Position:

chr8:1736486-1736674
# UCNEs:1
UCNEs:PRDM13_Brooklyn;


Zebrafish (danRer7):
Subcluster #1

Position:

chr16:1453092-1453346
# UCNEs:1
UCNEs:PRDM13_Bryan;
Subcluster #2

Position:

chr16:2540150-2548274
# UCNEs:2
UCNEs:PRDM13_Lucia; PRDM13_Lucy;
Subcluster #3

Position:

chr16:35109233-35109442
# UCNEs:1
UCNEs:PRDM13_Brooklyn;