UCNE: SOX1_Oberon
(id = 11691)

General information about the entry
Entry location:intergenic
Position:chr13:112755871-112756241
Length:371 nt
Sequence:SOX1_Oberon.fasta
Upstream gene:SOX1
Downstream gene:C13orf28
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): SOX1_cluster: chr13:112631109-112793888
External links:
CONDOR database:CRCNE00001877; CRCNE00001933; CRCNE00001878; CRCNE00001934;
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr1:144088454-144088824        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr8:12427962-12428332   Identity: 89.76%    E-value: 4.8e-80   Bit-score: 303.6

Armadillo (dasNov1):
Region #1:   scaffold_11706:32343-32454   Identity: 93.86%    E-value: 7.8e-17   Bit-score: 93.8

Opossum (monDom5):
Region #1:   chr7:79558636-79559006   Identity: 95.42%    E-value: 7.4e-90   Bit-score: 336.6

Platypus (ornAna1):
Region #1:   Ultra336:9174110-9174476   Identity: 93.75%    E-value: 2.6e-79   Bit-score: 300.7

Zebra_finch (taeGut1):
Region #1:   chr1:25410069-25410439   Identity: 95.96%    E-value: 1e-88   Bit-score: 331.3

Lizard (anoCar2):
Region #1:   chr3:105329124-105329495   Identity: 94.89%    E-value: 1.3e-86   Bit-score: 324.8

Painted_turtle (chrPic1):
Region #1:   JH584840:1023645-1024015   Identity: 94.61%    E-value: 5.4e-85   Bit-score: 320

Xenopus (xenTro3):
Region #1:   GL172678:611812-612184   Identity: 87.7%    E-value: 7.4e-70   Bit-score: 268.9

Fugu (fr2):
Region #1:   chrUn:100857879-100858178   Identity: 75.08%    E-value: 1.6e-41   Bit-score: 169.4
Region #2:   chrUn:293757358-293757649   Identity: 69.86%    E-value: 7e-26   Bit-score: 117.4

Medaka (oryLat2):
Region #1:   chr21:11387869-11388174   Identity: 75.16%    E-value: 1.7e-42   Bit-score: 172.8

Stickleback (gasAcu1):
Region #1:   chrXVI:7104773-7105085   Identity: 72.52%    E-value: 1.5e-38   Bit-score: 159.7
Region #2:   chrI:22999718-23000005   Identity: 69.55%    E-value: 2.4e-25   Bit-score: 115.8

Tetraodon (tetNig2):
Region #1:   chr2:11117537-11117839   Identity: 75%    E-value: 2.1e-42   Bit-score: 172.3
Region #2:   chr3:6750700-6750991   Identity: 69.18%    E-value: 4.8e-25   Bit-score: 114.7

Zebrafish (danRer7):
Region #1:   chr9:22760015-22760336   Identity: 78.57%    E-value: 5.7e-49   Bit-score: 195.1
Region #2:   chr1:46695395-46695703   Identity: 73.42%    E-value: 5.6e-36   Bit-score: 152

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):