Ultraconserved Gene Regulatory Blocks

UCNE: BCL11A_Roxane
(id = 19319)

General information about the entry

Entry location:

intergenic

Position:

chr2:60114231-60114511

Length:

281 nt

Sequence:

BCL11A_Roxane.fasta

Upstream gene:

FANCL

Downstream gene:

BCL11A

Paralogs:

chr1:57759869-57760034
chr1:199194675-199194830
chr13:65971624-65971850
chr13:84154264-84154482
chr14:97956029-97956245
chr16:82860092-82860373
chr2:66499420-66499531
chr2:67385347-67385580
chr2:145470226-145470469
chr3:28885937-28886134
chr3:35765140-35765299
chr4:167266256-167266399
chr5:27469155-27469336
chr5:125308978-125309228
chr6:69893094-69893339
chr8:56147087-56147266
chr9:16406084-16406316
chrX:123756560-123756748

Ultraconserved Genomic Regulatory Block (UGRB):

BCL11A_cluster: chr2:57968022-60795444

External links:

CONDOR database:

VISTA Enhancer Browser:

UCE (Bejerano et al. 2004):

Other browsers view:

[Ensembl] [ECR browser] [Ancora]

Conservation in chicken:

Chicken (galGal3):

Region: chr3:1628934-1629214 Identity: >95%

This UCNE has 13 paralogous regions in Chicken

Conservation in other species:

Mouse (mm10):

Region #1: chr11:24731904-24732185 Identity: 97.52% E-value: 3.1e-48 Bit-score: 197.5

This UCNE has 6 paralogous regions in Mouse

Armadillo (dasNov1):

This UCNE has 5 paralogous regions in Armadillo

Opossum (monDom5):

Region #1: chr1:633165578-633165856 Identity: 97.13% E-value: 4.2e-43 Bit-score: 180.9

This UCNE has 10 paralogous regions in Opossum

Platypus (ornAna1):

Region #1: Ultra56:3123717-3123997 Identity: 96.09% E-value: 3.2e-49 Bit-score: 200.3

This UCNE has 16 paralogous regions in Platypus

Zebra_finch (taeGut1):

Region #1: chr3:26928174-26928454 Identity: 96.09% E-value: 6.7e-47 Bit-score: 192

This UCNE has 14 paralogous regions in Zebra_finch

Lizard (anoCar2):

Region #1: chr1:258562084-258562388 Identity: 80.66% E-value: 5.5e-36 Bit-score: 156.2

This UCNE has 6 paralogous regions in Lizard

Painted_turtle (chrPic1):

Region #1: JH584790:2571350-2571547 Identity: 95.45% E-value: 8.8e-30 Bit-score: 136.2

This UCNE has 26 paralogous regions in Painted_turtle

Paralog #1: JH584780:1420462-1420742 Identity: 76.24% E-value: 6e-24 Bit-score: 116.8

Paralog #2: JH584854:1071855-1072124 Identity: 72.22% E-value: 2.4e-17 Bit-score: 94.9

Paralog #3: JH584599:7644591-7644845 Identity: 70.54% E-value: 0.000000000000019 Bit-score: 85.2

Paralog #4: JH584950:462268-462517 Identity: 67.79% E-value: 0.000000000005 Bit-score: 77.2

Paralog #5: JH584626:4808994-4809249 Identity: 69.73% E-value: 0.0000000000067 Bit-score: 76.8

Paralog #6: JH584862:358255-358475 Identity: 68.47% E-value: 0.0000000013 Bit-score: 69.2

Paralog #7: JH584681:8395866-8396106 Identity: 68.05% E-value: 0.0000000037 Bit-score: 67.6

Paralog #8: JH584816:1874315-1874531 Identity: 68.04% E-value: 0.0000000055 Bit-score: 67.1

Paralog #9: JH584835:1374039-1374293 Identity: 65.13% E-value: 0.000000024 Bit-score: 65

Paralog #10: JH584699:5435921-5436141 Identity: 66.96% E-value: 0.000000052 Bit-score: 63.8

Paralog #11: JH584794:3103536-3103804 Identity: 63.2% E-value: 0.000000052 Bit-score: 63.8

Paralog #12: JH584854:1071813-1072042 Identity: 66.52% E-value: 0.000000069 Bit-score: 63.4

Paralog #13: JH584653:941729-941983 Identity: 65.12% E-value: 0.00000014 Bit-score: 62.4

Paralog #14: JH584511:4198197-4198435 Identity: 65.29% E-value: 0.00000017 Bit-score: 62.2

Paralog #15: JH584837:1614467-1614733 Identity: 63.2% E-value: 0.00000054 Bit-score: 60.5

Paralog #16: JH584780:1420454-1420639 Identity: 71.58% E-value: 0.00000065 Bit-score: 60.2

Paralog #17: JH584815:995988-996194 Identity: 66.36% E-value: 0.0000021 Bit-score: 58.5

Paralog #18: JH584683:2787013-2787228 Identity: 65.16% E-value: 0.0000031 Bit-score: 57.9

Paralog #19: JH584595:427152-427429 Identity: 61.86% E-value: 0.0000046 Bit-score: 57.4

Paralog #20: JH584535:12038216-12038429 Identity: 65% E-value: 0.000005 Bit-score: 57.2

Paralog #21: JH584771:3072771-3073053 Identity: 61.19% E-value: 0.000005 Bit-score: 57.2

Paralog #22: JH584687:4846889-4847131 Identity: 62.9% E-value: 0.0000099 Bit-score: 56.3

Paralog #23: JH584682:11523186-11523392 Identity: 65.75% E-value: 0.000015 Bit-score: 55.7

Paralog #24: JH584677:484011-484139 Identity: 74.81% E-value: 0.000018 Bit-score: 55.4

Paralog #25: JH584444:1235803-1236036 Identity: 62.15% E-value: 0.000032 Bit-score: 54.6

Paralog #26: JH584684:10639542-10639748 Identity: 64.65% E-value: 0.000077 Bit-score: 53.3

Xenopus (xenTro3):

Region #1: GL172878:257924-258152 Identity: 82.13% E-value: 2e-23 Bit-score: 114.3

This UCNE has 3 paralogous regions in Xenopus

Fugu (fr2):

Medaka (oryLat2):

Stickleback (gasAcu1):

Tetraodon (tetNig2):

Zebrafish (danRer7):

Lamprey (petMar1):

Ciona_intestinalis (ci2):

Sea_urchin (strPur2):

Lancelet (braFlo1):

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UCNE: BCL11A_Roxane (id = 19319)

UCNE: BCL11A_Roxane
(id = 19319)