Ultraconserved Gene Regulatory Blocks

UCNE: HOXD_Ursula
(id = 21384)

General information about the entry

Entry location:

UTR

Position:

chr2:178084115-178084536

Length:

422 nt

Sequence:

HOXD_Ursula.fasta

Overlapping gene:

HNRNPA3

Paralogs:

chr1:54440283-54440630
chr1:65591561-65591701
chr1:81893308-81893708
chr1:113993366-113993768
chr10:44284281-44284686
chr11:32612949-32613322
chr12:52105830-52106235
chr13:66361678-66362053
chr15:57538783-57539146
chr18:48342434-48342832
chr19:54534769-54535020
chr2:197880750-197881149
chr2:217039212-217039602
chr4:83050820-83051217
chr6:25272049-25272417
chr6:48116236-48116595
chrX:139115653-139116029

Ultraconserved Genomic Regulatory Block (UGRB):

HOXD_cluster: chr2:175967909-178084536

External links:

CONDOR database:

VISTA Enhancer Browser:

UCE (Bejerano et al. 2004):

Other browsers view:

[Ensembl] [ECR browser] [Ancora]

Conservation in chicken:

Chicken (galGal3):

Region: chr7:16931742-16932165 Identity: >95%

Conservation in other species:

Mouse (mm10):

Region #1: chr2:75665378-75665799 Identity: 99.76% E-value: 1.5e-80 Bit-score: 305.4

This UCNE has 113 paralogous regions in Mouse

Paralog #1: chr4:12233963-12234368 Identity: 99.51% E-value: 9.7e-77 Bit-score: 292.8

Paralog #2: chrX:80457824-80458229 Identity: 99.51% E-value: 9.7e-77 Bit-score: 292.8

Paralog #3: chr16:97491132-97491537 Identity: 99.51% E-value: 9.7e-77 Bit-score: 292.8

Paralog #4: chr16:94241859-94242264 Identity: 99.26% E-value: 2.3e-76 Bit-score: 291.5

Paralog #5: chr2:24992942-24993347 Identity: 98.28% E-value: 8.1e-75 Bit-score: 286.4

Paralog #6: chr1:87543219-87543625 Identity: 97.05% E-value: 1.3e-72 Bit-score: 279

Paralog #7: chrX:9008613-9009012 Identity: 96.31% E-value: 3.1e-71 Bit-score: 274.5

Paralog #8: chr3:54482551-54482928 Identity: 99.21% E-value: 2.2e-70 Bit-score: 271.7

Paralog #9: chr1:9575661-9576038 Identity: 99.21% E-value: 2.2e-70 Bit-score: 271.7

Paralog #10: chr7:94036527-94036939 Identity: 94.93% E-value: 4.1e-70 Bit-score: 270.8

Paralog #11: chr5:16729606-16729983 Identity: 98.94% E-value: 5.5e-70 Bit-score: 270.4

Paralog #12: chrX:71198183-71198591 Identity: 95.85% E-value: 8.9e-70 Bit-score: 269.7

Paralog #13: chr1:143684315-143684692 Identity: 98.41% E-value: 3.2e-69 Bit-score: 267.8

Paralog #14: chr11:8885308-8885685 Identity: 98.15% E-value: 7.8e-69 Bit-score: 266.5

Paralog #15: chr2:181217818-181218195 Identity: 98.15% E-value: 7.8e-69 Bit-score: 266.5

Paralog #16: chr10:59807639-59808016 Identity: 98.15% E-value: 7.8e-69 Bit-score: 266.5

Paralog #17: chr14:122119021-122119395 Identity: 97.88% E-value: 6.1e-68 Bit-score: 263.6

Paralog #18: chr15:41923166-41923536 Identity: 98.38% E-value: 1e-67 Bit-score: 262.9

Paralog #19: chr5:13082154-13082555 Identity: 93.87% E-value: 2.7e-67 Bit-score: 261.4

Paralog #20: chr8:112013577-112013943 Identity: 98.64% E-value: 5.9e-67 Bit-score: 260.3

Paralog #21: chrX:74134756-74135122 Identity: 98.37% E-value: 1.4e-66 Bit-score: 259

Paralog #22: chr13:96083108-96083501 Identity: 93.37% E-value: 8.4e-66 Bit-score: 256.5

Paralog #23: chr7:65785944-65786310 Identity: 96.3% E-value: 1.2e-65 Bit-score: 255.9

Paralog #24: chr6:84032683-84033076 Identity: 92.36% E-value: 4.5e-65 Bit-score: 254.1

Paralog #25: chr4:111806992-111807348 Identity: 97.8% E-value: 9.8e-65 Bit-score: 252.9

Paralog #26: chr1:181373277-181373651 Identity: 95.77% E-value: 2.4e-64 Bit-score: 251.6

Paralog #27: chr5:117187348-117187745 Identity: 92.96% E-value: 5.2e-64 Bit-score: 250.5

Paralog #28: chr3:157816344-157816707 Identity: 95.69% E-value: 2.3e-63 Bit-score: 248.4

Paralog #29: chr2:132100911-132101267 Identity: 96.69% E-value: 3.4e-63 Bit-score: 247.8

Paralog #30: chr15:77442914-77443275 Identity: 95.88% E-value: 3e-62 Bit-score: 244.7

Paralog #31: chr12:98098972-98099342 Identity: 93.92% E-value: 1.2e-61 Bit-score: 242.7

Paralog #32: chr15:77703059-77703420 Identity: 95.33% E-value: 1.7e-61 Bit-score: 242.1

Paralog #33: chr11:50126399-50126772 Identity: 93.12% E-value: 1.7e-60 Bit-score: 238.9

Paralog #34: chr12:31099217-31099611 Identity: 89.83% E-value: 1.5e-59 Bit-score: 235.7

Paralog #35: chr11:38220229-38220589 Identity: 92% E-value: 7.7e-59 Bit-score: 233.3

Paralog #36: chr12:116431801-116432180 Identity: 90.89% E-value: 8.7e-57 Bit-score: 226.5

Paralog #37: chr7:51698978-51699354 Identity: 88.42% E-value: 2.3e-56 Bit-score: 225.1

Paralog #38: chr5:17494298-17494668 Identity: 90.24% E-value: 5.6e-56 Bit-score: 223.8

Paralog #39: chr4:111790244-111790611 Identity: 89.71% E-value: 3.3e-55 Bit-score: 221.3

Paralog #40: chr18:65502860-65503222 Identity: 89.81% E-value: 8e-55 Bit-score: 220

Paralog #41: chrX:18944001-18944378 Identity: 88.19% E-value: 2.4e-54 Bit-score: 218.4

Paralog #42: chr9:107835347-107835674 Identity: 92.84% E-value: 4.4e-52 Bit-score: 210.9

Paralog #43: chr3:73934137-73934494 Identity: 88.14% E-value: 1.4e-51 Bit-score: 209.2

Paralog #44: chrX:13367928-13368303 Identity: 86.68% E-value: 6.2e-51 Bit-score: 207.1

Paralog #45: chr7:43742715-43743094 Identity: 86.35% E-value: 4e-50 Bit-score: 204.4

Paralog #46: chr4:136608493-136608825 Identity: 84.95% E-value: 1.2e-46 Bit-score: 192.9

Paralog #47: chr2:18178040-18178395 Identity: 85.44% E-value: 1.4e-45 Bit-score: 189.3

Paralog #48: chr6:41499085-41499449 Identity: 82.75% E-value: 6.6e-45 Bit-score: 187.1

Paralog #49: chr7:41192518-41192781 Identity: 96.6% E-value: 2.1e-43 Bit-score: 182.1

Paralog #50: chr2:140044717-140045108 Identity: 80.73% E-value: 2.3e-43 Bit-score: 182

Paralog #51: chr8:15099974-15100313 Identity: 81.38% E-value: 1.2e-42 Bit-score: 179.5

Paralog #52: chr1:165734240-165734587 Identity: 82.24% E-value: 2e-42 Bit-score: 178.8

Paralog #53: chr1:42104345-42104608 Identity: 95.08% E-value: 3.6e-42 Bit-score: 178

Paralog #54: chr11:54746105-54746359 Identity: 95.79% E-value: 8.6e-42 Bit-score: 176.7

Paralog #55: chr8:100533704-100534117 Identity: 77.7% E-value: 1.6e-41 Bit-score: 175.8

Paralog #56: chr3:30572417-30572800 Identity: 79.9% E-value: 3e-40 Bit-score: 171.6

Paralog #57: chr3:16170776-16171160 Identity: 78.48% E-value: 6.9e-39 Bit-score: 167

Paralog #58: chrX:91809596-91810011 Identity: 75.29% E-value: 4.1e-38 Bit-score: 164.5

Paralog #59: chr15:35837814-35838193 Identity: 76.46% E-value: 2.2e-37 Bit-score: 162.1

Paralog #60: chr2:46479032-46479405 Identity: 76.73% E-value: 2.9e-37 Bit-score: 161.7

Paralog #61: chrX:88035945-88036267 Identity: 81.71% E-value: 8.6e-37 Bit-score: 160.1

Paralog #62: chr3:27168906-27169186 Identity: 87.63% E-value: 9.5e-37 Bit-score: 160

Paralog #63: chrX:5694134-5694507 Identity: 77.72% E-value: 1e-36 Bit-score: 159.8

Paralog #64: chr14:89711626-89712023 Identity: 74.4% E-value: 7.5e-36 Bit-score: 157

Paralog #65: chrX:112276137-112276508 Identity: 76.68% E-value: 4.9e-35 Bit-score: 154.3

Paralog #66: chr6:53172745-53173098 Identity: 78.67% E-value: 3.5e-34 Bit-score: 151.4

Paralog #67: chr7:31349497-31349878 Identity: 74.39% E-value: 6.9e-34 Bit-score: 150.4

Paralog #68: chr19:44230077-44230457 Identity: 75.25% E-value: 1.9e-33 Bit-score: 149

Paralog #69: chr15:33680456-33680820 Identity: 75.89% E-value: 2.4e-32 Bit-score: 145.3

Paralog #70: chr10:9747367-9747575 Identity: 94.88% E-value: 5.8e-32 Bit-score: 144.1

Paralog #71: chr1:165612700-165613037 Identity: 76.8% E-value: 1e-31 Bit-score: 143.2

Paralog #72: chr15:20368692-20369007 Identity: 78.48% E-value: 1.3e-31 Bit-score: 142.9

Paralog #73: chr2:122888538-122888931 Identity: 72.39% E-value: 2.1e-31 Bit-score: 142.2

Paralog #74: chrX:91642554-91642935 Identity: 74.55% E-value: 1.1e-30 Bit-score: 139.8

Paralog #75: chr10:14159660-14160003 Identity: 76.64% E-value: 1.2e-30 Bit-score: 139.7

Paralog #76: chrX:91772288-91772670 Identity: 74.36% E-value: 1.6e-30 Bit-score: 139.2

Paralog #77: chr14:122699118-122699438 Identity: 77.91% E-value: 8.8e-30 Bit-score: 136.8

Paralog #78: chr1:176882611-176882968 Identity: 74.54% E-value: 8.8e-30 Bit-score: 136.8

Paralog #79: chr18:61598023-61598307 Identity: 80.34% E-value: 2.9e-29 Bit-score: 135.1

Paralog #80: chr14:8849015-8849380 Identity: 72.31% E-value: 2e-27 Bit-score: 129

Paralog #81: chr13:69664155-69664474 Identity: 72.63% E-value: 1.2e-26 Bit-score: 126.5

Paralog #82: chrX:134048599-134048780 Identity: 92.86% E-value: 1.2e-24 Bit-score: 119.8

Paralog #83: chr7:109656249-109656494 Identity: 80.24% E-value: 2.1e-24 Bit-score: 118.9

Paralog #84: chr1:102717545-102717747 Identity: 85.78% E-value: 1.1e-22 Bit-score: 113.3

Paralog #85: chrX:41905783-41906095 Identity: 70.99% E-value: 2.3e-21 Bit-score: 108.9

Paralog #86: chr13:96677052-96677361 Identity: 70.55% E-value: 4.1e-21 Bit-score: 108

Paralog #87: chr17:86004783-86005057 Identity: 74.49% E-value: 4.5e-18 Bit-score: 97.9

Paralog #88: chr7:110426570-110426754 Identity: 81.73% E-value: 5.4e-18 Bit-score: 97.6

Paralog #89: chr11:25418396-25418591 Identity: 80.61% E-value: 5.2e-17 Bit-score: 94.4

Paralog #90: chr15:42400463-42400667 Identity: 77.88% E-value: 5.5e-16 Bit-score: 91

Paralog #91: chr19:6879686-6879888 Identity: 76.96% E-value: 0.000000000000003 Bit-score: 88.6

Paralog #92: chr19:29172229-29172445 Identity: 77.33% E-value: 0.000000000000004 Bit-score: 88.1

Paralog #93: chr7:34059969-34060289 Identity: 66.67% E-value: 0.000000000000013 Bit-score: 86.4

Paralog #94: chr4:62395887-62396177 Identity: 68.01% E-value: 0.000000000000042 Bit-score: 84.7

Paralog #95: chr3:89811188-89811379 Identity: 74.75% E-value: 0.0000000000026 Bit-score: 78.8

Paralog #96: chr12:105578647-105578829 Identity: 76.47% E-value: 0.0000000000029 Bit-score: 78.6

Paralog #97: chr7:41192148-41192272 Identity: 87.6% E-value: 0.000000000011 Bit-score: 76.6

Paralog #98: chr3:150922680-150922897 Identity: 72.73% E-value: 0.000000000013 Bit-score: 76.5

Paralog #99: chr9:14416835-14417038 Identity: 72.77% E-value: 0.000000000067 Bit-score: 74.1

Paralog #100: chr1:186848523-186848855 Identity: 62.87% E-value: 0.00000000009 Bit-score: 73.7

Paralog #101: chr17:30054675-30054996 Identity: 61.77% E-value: 0.0000000001 Bit-score: 73.5

Paralog #102: chr8:111307319-111307500 Identity: 77.54% E-value: 0.00000000018 Bit-score: 72.7

Paralog #103: chr17:53025835-53026044 Identity: 72.17% E-value: 0.00000000027 Bit-score: 72.1

Paralog #104: chr14:90780212-90780381 Identity: 75.86% E-value: 0.00000000096 Bit-score: 70.2

Paralog #105: chr4:79349511-79349738 Identity: 68.53% E-value: 0.0000000011 Bit-score: 70.1

Paralog #106: chrX:22893168-22893373 Identity: 71.7% E-value: 0.0000000069 Bit-score: 67.4

Paralog #107: chr15:42403243-42403374 Identity: 79.55% E-value: 0.000000014 Bit-score: 66.4

Paralog #108: chrX:82527624-82527783 Identity: 73.12% E-value: 0.00000002 Bit-score: 65.8

Paralog #109: chr7:34068440-34068545 Identity: 86.92% E-value: 0.000000098 Bit-score: 63.6

Paralog #110: chr19:34697113-34697304 Identity: 68.23% E-value: 0.00000026 Bit-score: 62.2

Paralog #111: chr7:33986959-33987064 Identity: 85.05% E-value: 0.00000057 Bit-score: 61

Paralog #112: chrX:121716760-121716935 Identity: 70.37% E-value: 0.0000015 Bit-score: 59.6

Paralog #113: chr14:82834973-82835142 Identity: 71.02% E-value: 0.0000034 Bit-score: 58.5

Armadillo (dasNov1):

Region #1: scaffold_3768:43930-44332 Identity: 98.76% E-value: 3.9e-65 Bit-score: 254.4

Region #2: scaffold_144164:2996-3373 Identity: 98.94% E-value: 4.9e-61 Bit-score: 240.8

Region #3: scaffold_68229:1126-1490 Identity: 95.96% E-value: 1.1e-55 Bit-score: 223

Region #4: scaffold_5280:41638-42040 Identity: 90.64% E-value: 1.3e-53 Bit-score: 216.1

Region #5: scaffold_124652:398-793 Identity: 89.93% E-value: 1e-51 Bit-score: 209.8

Region #6: scaffold_217148:1642-2039 Identity: 89% E-value: 3.6e-50 Bit-score: 204.7

Region #7: scaffold_7758:37759-38129 Identity: 87.37% E-value: 2.1e-44 Bit-score: 185.6

Region #8: scaffold_187239:4234-4484 Identity: 88.54% E-value: 1.1e-27 Bit-score: 130

This UCNE has 1 paralogous region in Armadillo

Opossum (monDom5):

Region #1: chrUn:83770317-83770737 Identity: 99.53% E-value: 5.3e-68 Bit-score: 264.2

This UCNE has 16 paralogous regions in Opossum

Platypus (ornAna1):

Region #1: Ultra514:15493097-15493519 Identity: 99.29% E-value: 1.4e-86 Bit-score: 325

Zebra_finch (taeGut1):

Region #1: chr7:17546119-17546542 Identity: 94.87% E-value: 8.7e-71 Bit-score: 271.9

Lizard (anoCar2):

Region #1: chrUn_GL343411:540377-540782 Identity: 87.44% E-value: 3.9e-57 Bit-score: 227.1

Painted_turtle (chrPic1):

Region #1: JH584712:2869550-2869731 Identity: 96.24% E-value: 6.5e-28 Bit-score: 130.6

This UCNE has 1 paralogous region in Painted_turtle

Xenopus (xenTro3):

Region #1: GL172799:39359-39764 Identity: 85.34% E-value: 4.6e-51 Bit-score: 206.7

Fugu (fr2):

Region #1: chrUn:173151841-173151945 Identity: 87.39% E-value: 0.00000000000032 Bit-score: 75.6

Medaka (oryLat2):

Region #1: chr21:24754380-24754807 Identity: 60.18% E-value: 0.00000000000021 Bit-score: 76.3

Stickleback (gasAcu1):

Region #1: chrXVI:9703640-9703779 Identity: 74.65% E-value: 0.000000008 Bit-score: 61.2

Tetraodon (tetNig2):

Region #1: chr2:13337409-13337513 Identity: 86.49% E-value: 0.0000000000033 Bit-score: 72.2

Zebrafish (danRer7):

Lamprey (petMar1):

Ciona_intestinalis (ci2):

Sea_urchin (strPur2):

Lancelet (braFlo1):

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UCNE: HOXD_Ursula (id = 21384)

UCNE: HOXD_Ursula
(id = 21384)