Ultraconserved Gene Regulatory Blocks

UCNE: TSHZ2_Leontina
(id = 22449)

General information about the entry

Entry location:

intergenic

Position:

chr20:52104687-52104917

Length:

231 nt

Sequence:

TSHZ2_Leontina.fasta

Upstream gene:

TSHZ2

Downstream gene:

ZNF217

Paralogs:

chr1:59924229-59924422
chr12:79225967-79226130
chr12:117020917-117021107
chr13:51467492-51467693
chr13:108193176-108193387
chr15:96837627-96837824
chr16:55130454-55130644
chr16:73923737-73923924
chr16:79006124-79006324
chr17:33165102-33165295
chr17:71445439-71445569
chr18:44634246-44634354
chr18:50929814-50930006
chr18:72957010-72957135
chr18:76371722-76371934
chr19:30110296-30110460
chr2:53147963-53148123
chr2:77500224-77500395
chr2:115392809-115393030
chr2:221127218-221127407
chr20:39392852-39392963
chr3:59783403-59783608
chr3:66320810-66321005
chr4:141147584-141147792
chr5:105373192-105373391
chr7:68469512-68469729
chr9:14118945-14119127

Ultraconserved Genomic Regulatory Block (UGRB):

TSHZ2_cluster: chr20:50980751-52105849

External links:

CONDOR database:

VISTA Enhancer Browser:

UCE (Bejerano et al. 2004):

Other browsers view:

[Ensembl] [ECR browser] [Ancora]

Conservation in chicken:

Chicken (galGal3):

Region: chr20:12560831-12561061 Identity: >95%

This UCNE has 19 paralogous regions in Chicken

Paralog #1: chr2:58313043-58313260 Identity: 72.65% E-value: 0.00000000000092 Bit-score: 78.1

Paralog #2: chrZ:48005748-48005947 Identity: 73.08% E-value: 0.00000000004 Bit-score: 72.7

Paralog #3: chr2:58313031-58313250 Identity: 71.24% E-value: 0.000000000052 Bit-score: 72.3

Paralog #4: chrZ:48005755-48005952 Identity: 69.42% E-value: 0.0000000096 Bit-score: 64.8

Paralog #5: chr10:17628657-17628863 Identity: 68.9% E-value: 0.000000013 Bit-score: 64.4

Paralog #6: chr9:8314582-8314784 Identity: 68.66% E-value: 0.000000099 Bit-score: 61.4

Paralog #7: chrZ:31093148-31093336 Identity: 69.41% E-value: 0.00000016 Bit-score: 60.7

Paralog #8: chr8:27323783-27323986 Identity: 67.61% E-value: 0.00000016 Bit-score: 60.7

Paralog #9: chr11:9005327-9005498 Identity: 70.06% E-value: 0.0000013 Bit-score: 57.6

Paralog #10: chr11:8958548-8958719 Identity: 70.06% E-value: 0.0000013 Bit-score: 57.6

Paralog #11: chr1:174149929-174150125 Identity: 67% E-value: 0.0000027 Bit-score: 56.6

Paralog #12: chr2:150645214-150645420 Identity: 65.33% E-value: 0.000003 Bit-score: 56.5

Paralog #13: chr20:4694748-4694948 Identity: 66.36% E-value: 0.0000033 Bit-score: 56.3

Paralog #14: chr20:4694719-4694936 Identity: 65.09% E-value: 0.0000043 Bit-score: 56

Paralog #15: chr12:12464640-12464821 Identity: 68.85% E-value: 0.00002 Bit-score: 53.8

Paralog #16: chrZ:31093164-31093343 Identity: 66.03% E-value: 0.000041 Bit-score: 52.7

Paralog #17: chr8:27323793-27324005 Identity: 64.44% E-value: 0.000044 Bit-score: 52.6

Paralog #18: chr3:109305030-109305269 Identity: 62.24% E-value: 0.000083 Bit-score: 51.7

Paralog #19: chr19:4606596-4606795 Identity: 64.36% E-value: 0.000083 Bit-score: 51.7

Conservation in other species:

Mouse (mm10):

Region #1: chr2:170071271-170071501 Identity: 99.13% E-value: 1.4e-34 Bit-score: 151.9

This UCNE has 7 paralogous regions in Mouse

Armadillo (dasNov1):

Region #1: scaffold_139:211242-211469 Identity: 99.12% E-value: 2.3e-30 Bit-score: 138

Region #2: scaffold_139:211269-211476 Identity: 76.64% E-value: 0.000000000015 Bit-score: 75.6

This UCNE has 7 paralogous regions in Armadillo

Opossum (monDom5):

Region #1: chr1:491851196-491851426 Identity: 98.7% E-value: 8.5e-30 Bit-score: 136.4

This UCNE has 7 paralogous regions in Opossum

Platypus (ornAna1):

Region #1: Ultra516:4470288-4470518 Identity: 99.13% E-value: 4.2e-41 Bit-score: 173.1

This UCNE has 26 paralogous regions in Platypus

Paralog #1: Ultra516:4470318-4470544 Identity: 74.58% E-value: 2.4e-16 Bit-score: 90.9

Paralog #2: Ultra314:656844-657055 Identity: 72.81% E-value: 0.000000000000036 Bit-score: 83.6

Paralog #3: Ultra314:656832-657051 Identity: 71.68% E-value: 0.0000000000004 Bit-score: 80.2

Paralog #4: Ultra84:5639517-5639723 Identity: 72.25% E-value: 0.0000000000008 Bit-score: 79.2

Paralog #5: chrX5:15905546-15905730 Identity: 71.43% E-value: 0.00000000036 Bit-score: 70.3

Paralog #6: Contig13478:16370-16585 Identity: 67.28% E-value: 0.00000000054 Bit-score: 69.8

Paralog #7: Ultra517:1641919-1642115 Identity: 70.67% E-value: 0.00000000072 Bit-score: 69.3

Paralog #8: Ultra84:5639523-5639728 Identity: 69.48% E-value: 0.0000000022 Bit-score: 67.7

Paralog #9: Ultra336:4793854-4794058 Identity: 68.4% E-value: 0.0000000066 Bit-score: 66.1

Paralog #10: chr1:28824694-28824909 Identity: 65.9% E-value: 0.000000008 Bit-score: 65.9

Paralog #11: Ultra337:5705040-5705234 Identity: 67.46% E-value: 0.000000073 Bit-score: 62.7

Paralog #12: Ultra25:402461-402699 Identity: 65.71% E-value: 0.000000073 Bit-score: 62.7

Paralog #13: Ultra517:1641920-1642109 Identity: 68.16% E-value: 0.00000011 Bit-score: 62.1

Paralog #14: chr5:12825082-12825285 Identity: 65.88% E-value: 0.00000029 Bit-score: 60.7

Paralog #15: chrX5:15905553-15905737 Identity: 67.94% E-value: 0.00000033 Bit-score: 60.5

Paralog #16: Ultra341:10424663-10424814 Identity: 70.3% E-value: 0.00000089 Bit-score: 59.1

Paralog #17: chr3:24957677-24957867 Identity: 66.67% E-value: 0.00000089 Bit-score: 59.1

Paralog #18: chr3:24957654-24957860 Identity: 64.32% E-value: 0.000004 Bit-score: 56.9

Paralog #19: Ultra337:5705045-5705256 Identity: 62.95% E-value: 0.0000089 Bit-score: 55.7

Paralog #20: Ultra336:4793860-4794057 Identity: 64.85% E-value: 0.000011 Bit-score: 55.5

Paralog #21: Contig8464:6353-6540 Identity: 67.19% E-value: 0.000044 Bit-score: 53.4

Paralog #22: Contig13478:16385-16589 Identity: 62.56% E-value: 0.000049 Bit-score: 53.3

Paralog #23: Ultra519:521569-521752 Identity: 65.43% E-value: 0.000054 Bit-score: 53.1

Paralog #24: chr3:30588888-30589077 Identity: 63.54% E-value: 0.00006 Bit-score: 53

Paralog #25: chr11:4042526-4042716 Identity: 65.02% E-value: 0.000073 Bit-score: 52.7

Paralog #26: Ultra380:3446378-3446511 Identity: 70.5% E-value: 0.000089 Bit-score: 52.4

Zebra_finch (taeGut1):

Region #1: chr20:13796397-13796627 Identity: 98.7% E-value: 3.4e-36 Bit-score: 156.1

This UCNE has 14 paralogous regions in Zebra_finch

Lizard (anoCar2):

Region #1: chrUn_GL343226:301467-301698 Identity: 95.28% E-value: 8e-35 Bit-score: 152.1

This UCNE has 9 paralogous regions in Lizard

Painted_turtle (chrPic1):

Region #1: JH584481:1181238-1181468 Identity: 97.84% E-value: 7.4e-35 Bit-score: 152.7

This UCNE has 29 paralogous regions in Painted_turtle

Paralog #1: JH584444:5702707-5702905 Identity: 75.73% E-value: 0.00000000000068 Bit-score: 79.8

Paralog #2: JH584481:1181268-1181477 Identity: 74.54% E-value: 0.0000000000013 Bit-score: 78.9

Paralog #3: JH584442:6037329-6037546 Identity: 72.2% E-value: 0.0000000000053 Bit-score: 76.8

Paralog #4: JH584444:5702713-5702912 Identity: 72.33% E-value: 0.000000000065 Bit-score: 73.2

Paralog #5: JH584442:6037317-6037536 Identity: 70.8% E-value: 0.0000000003 Bit-score: 71

Paralog #6: JH584557:11600769-11600976 Identity: 70.59% E-value: 0.000000011 Bit-score: 65.8

Paralog #7: JH586317:33185-33378 Identity: 70.81% E-value: 0.000000031 Bit-score: 64.3

Paralog #8: JH584557:2189290-2189485 Identity: 69.95% E-value: 0.000000053 Bit-score: 63.5

Paralog #9: JH584505:5227742-5227942 Identity: 68.6% E-value: 0.000000076 Bit-score: 63

Paralog #10: JH584483:5147373-5147581 Identity: 67.92% E-value: 0.000000091 Bit-score: 62.8

Paralog #11: JH584458:11582451-11582644 Identity: 70.3% E-value: 0.00000011 Bit-score: 62.5

Paralog #12: JH584579:4799080-4799275 Identity: 68.54% E-value: 0.00000022 Bit-score: 61.5

Paralog #13: JH584687:7431285-7431491 Identity: 68.4% E-value: 0.00000035 Bit-score: 60.8

Paralog #14: JH584487:5216165-5216363 Identity: 68.57% E-value: 0.00000038 Bit-score: 60.7

Paralog #15: JH584653:2287744-2287929 Identity: 68.49% E-value: 0.00000065 Bit-score: 59.9

Paralog #16: JH584573:1504302-1504506 Identity: 69.19% E-value: 0.0000027 Bit-score: 57.9

Paralog #17: JH584744:2786544-2786711 Identity: 71.18% E-value: 0.000003 Bit-score: 57.7

Paralog #18: JH584680:17972661-17972870 Identity: 66.82% E-value: 0.0000035 Bit-score: 57.5

Paralog #19: JH584458:11582446-11582645 Identity: 66.18% E-value: 0.0000042 Bit-score: 57.2

Paralog #20: JH584557:2189312-2189494 Identity: 69.19% E-value: 0.0000066 Bit-score: 56.6

Paralog #21: JH584649:3981437-3981645 Identity: 65.28% E-value: 0.000012 Bit-score: 55.7

Paralog #22: JH584798:406556-406743 Identity: 66.99% E-value: 0.000019 Bit-score: 55

Paralog #23: JH584687:7431274-7431490 Identity: 66.06% E-value: 0.000019 Bit-score: 55

Paralog #24: JH584653:2287737-2287913 Identity: 66.03% E-value: 0.000033 Bit-score: 54.2

Paralog #25: JH584557:11600753-11600956 Identity: 66.36% E-value: 0.00004 Bit-score: 54

Paralog #26: JH584573:1504304-1504507 Identity: 66.34% E-value: 0.00004 Bit-score: 54

Paralog #27: JH584687:2176240-2176430 Identity: 66.49% E-value: 0.000043 Bit-score: 53.9

Paralog #28: JH584798:406552-406737 Identity: 66.67% E-value: 0.000047 Bit-score: 53.7

Paralog #29: JH585062:387386-387602 Identity: 64.47% E-value: 0.000062 Bit-score: 53.3

Xenopus (xenTro3):

Region #1: GL173004:1141939-1142153 Identity: 64.68% E-value: 0.000012 Bit-score: 54.9

This UCNE has 2 paralogous regions in Xenopus

Fugu (fr2):

Medaka (oryLat2):

Stickleback (gasAcu1):

Tetraodon (tetNig2):

Zebrafish (danRer7):

Lamprey (petMar1):

Ciona_intestinalis (ci2):

Sea_urchin (strPur2):

Lancelet (braFlo1):

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UCNE: TSHZ2_Leontina (id = 22449)

UCNE: TSHZ2_Leontina
(id = 22449)