UCNE: SOX2_Aladdin_1
(id = 24963)

General information about the entry
Entry location:UTR
Position:chr3:180694091-180694362
Length:272 nt
Sequence:SOX2_Aladdin_1.fasta
Overlapping gene:FXR1
Paralogs:chr12:42825191-42825457
chr21:24991012-24991246
Ultraconserved Genomic Regulatory Block (UGRB): SOX2_cluster: chr3:180436793-182314792
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:18237173-18237447        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr3:34069099-34069367   Identity: 97.79%    E-value: 4.8e-50   Bit-score: 203.5
This UCNE has 1 paralogous region in Mouse

Armadillo (dasNov1):
Region #1:   scaffold_8221:26321-26588   Identity: 86.81%    E-value: 2.5e-33   Bit-score: 148.1
Region #2:   scaffold_73489:7089-7343   Identity: 86.5%    E-value: 1.3e-32   Bit-score: 145.8
Region #3:   scaffold_256117:522-772   Identity: 88.58%    E-value: 9.3e-31   Bit-score: 139.6

Opossum (monDom5):
Region #1:   chr7:204122841-204123110   Identity: 94.16%    E-value: 6.5e-40   Bit-score: 170.3
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Ultra347:471723-471990   Identity: 93.77%    E-value: 4.9e-49   Bit-score: 199.7

Zebra_finch (taeGut1):
Region #1:   chr9:19589704-19589978   Identity: 93.5%    E-value: 3.8e-45   Bit-score: 186.1
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:1479566-1479841   Identity: 91.04%    E-value: 8.9e-48   Bit-score: 195.4

Painted_turtle (chrPic1):
Region #1:   JH584502:3227178-3227455   Identity: 94.29%    E-value: 4.8e-43   Bit-score: 180.2

Xenopus (xenTro3):
Region #1:   GL172881:1389857-1390130   Identity: 85.56%    E-value: 1.2e-35   Bit-score: 154.8

Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):