UCNE: SOX2_Chao
(id = 24973)

General information about the entry
Entry location:intergenic
Position:chr3:180970494-180970904
Length:411 nt
Sequence:SOX2_Chao.fasta
Upstream gene:DNAJC19
Downstream gene:SOX2OT
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): SOX2_cluster: chr3:180436793-182314792
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:18172203-18172627        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr3:34266561-34266975   Identity: 93.73%    E-value: 1.1e-82   Bit-score: 312.5

Armadillo (dasNov1):
Region #1:   scaffold_1465:81158-81565   Identity: 99.03%    E-value: 4.9e-80   Bit-score: 303.9

Opossum (monDom5):
Region #1:   chr7:204370895-204371320   Identity: 89.46%    E-value: 9.2e-74   Bit-score: 283.3

Platypus (ornAna1):
Region #1:   Ultra347:599647-600054   Identity: 97.57%    E-value: 1.7e-91   Bit-score: 341.3

Zebra_finch (taeGut1):
Region #1:   chr9:19518981-19519415   Identity: 92.87%    E-value: 1.7e-82   Bit-score: 310.8
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:1342694-1343097   Identity: 86.14%    E-value: 2.1e-69   Bit-score: 267.8

Painted_turtle (chrPic1):
Region #1:   JH584502:3353523-3353945   Identity: 95.27%    E-value: 8e-84   Bit-score: 316.2

Xenopus (xenTro3):
Region #1:   GL172881:1324666-1325073   Identity: 92.23%    E-value: 1.1e-75   Bit-score: 288.5
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):