UCNE: IRXA_Ruby
(id = 26852)

General information about the entry
Entry location:intergenic
Position:chr5:3512399-3513193
Length:795 nt
Sequence:IRXA_Ruby.fasta
Upstream gene:C5orf38
Downstream gene:IRX1
Paralogs:chr16:54323649-54324063: IRXB_Ruby;
chr16:55223384-55223804: IRXB_Vivien;
chr5:2112681-2113110: IRXA_Vivien_1; IRXA_Vivien_2;
Ultraconserved Genomic Regulatory Block (UGRB): IRXA_cluster: chr5:2112526-4805550
External links:
CONDOR database:CRCNE00006652; CRCNE00006651;
VISTA Enhancer Browser:hs261;
UCE (Bejerano et al. 2004):uc.150 http://users.soe.ucsc.edu/~jill/ultra.html
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr2:89378964-89379759        Identity: >95%
This UCNE has 3 paralogous regions in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr13:72028672-72029463   Identity: 97.6%    E-value: 5.6e-180   Bit-score: 636.7
This UCNE has 3 paralogous regions in Mouse

Armadillo (dasNov1):
Region #1:   scaffold_74248:5228-6017   Identity: 95.82%    E-value: 3.8e-155   Bit-score: 554.3
This UCNE has 3 paralogous regions in Armadillo

Opossum (monDom5):
Region #1:   chr3:96103243-96104039   Identity: 97.87%    E-value: 5.3e-164   Bit-score: 584
This UCNE has 3 paralogous regions in Opossum

Platypus (ornAna1):
Region #1:   chrX3:3748012-3748806   Identity: 97.61%    E-value: 4.6e-182   Bit-score: 643.1
This UCNE has 3 paralogous regions in Platypus

Zebra_finch (taeGut1):
Region #1:   chr2:92233450-92234244   Identity: 97.61%    E-value: 1.2e-171   Bit-score: 607.9
This UCNE has 3 paralogous regions in Zebra_finch

Lizard (anoCar2):
Region #1:   chrUn_GL343292:863390-864186   Identity: 96.86%    E-value: 1.1e-182   Bit-score: 645.1
This UCNE has 3 paralogous regions in Lizard

Painted_turtle (chrPic1):
This UCNE has 3 paralogous regions in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172767:1000494-1001290   Identity: 96.49%    E-value: 2e-163   Bit-score: 580.8
This UCNE has 3 paralogous regions in Xenopus

Fugu (fr2):
Region #1:   chrUn:63933939-63934502   Identity: 92.39%    E-value: 3.9e-135   Bit-score: 481.5
Region #2:   chrUn:63934639-63934788   Identity: 88.67%    E-value: 5.3e-27   Bit-score: 122.3
This UCNE has 4 paralogous regions in Fugu

Medaka (oryLat2):
Region #1:   chr16:8805571-8806393   Identity: 81.77%    E-value: 7.3e-143   Bit-score: 507.3
This UCNE has 4 paralogous regions in Medaka

Stickleback (gasAcu1):
Region #1:   chrXX:6765590-6766420   Identity: 84.25%    E-value: 2e-157   Bit-score: 555.7
This UCNE has 3 paralogous regions in Stickleback

Tetraodon (tetNig2):
This UCNE has 2 paralogous regions in Tetraodon

Zebrafish (danRer7):
Region #1:   chr16:722515-723271   Identity: 81.85%    E-value: 2.8e-117   Bit-score: 423.1
Region #2:   chr19:28617468-28617893   Identity: 69.06%    E-value: 2.9e-34   Bit-score: 147.4
This UCNE has 5 paralogous regions in Zebrafish

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):