UCNE: EBF1_Scarlett
(id = 28483)

General information about the entry
Entry location:intron
Position:chr5:158341756-158342107
Length:352 nt
Sequence:EBF1_Scarlett.fasta
Overlapping gene:EBF1
Paralogs:chr10:131691529-131691841: EBF3_Scarlett;
chr20:2719364-2719619
chr8:25775847-25776105: EBF2_Scarlett;
Ultraconserved Genomic Regulatory Block (UGRB): EBF1_cluster: chr5:157198694-158509587
External links:
CONDOR database:CRCNE00010821; CRCNE00010820; CRCNE00010772;
VISTA Enhancer Browser:hs230;
UCE (Bejerano et al. 2004):uc.175 http://users.soe.ucsc.edu/~jill/ultra.html
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr13:10863149-10863500        Identity: >95%
This UCNE has 2 paralogous regions in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr11:44800282-44800630   Identity: 97.15%    E-value: 7.2e-53   Bit-score: 213.2
This UCNE has 3 paralogous regions in Mouse

Armadillo (dasNov1):
Region #1:   scaffold_47:193541-193892   Identity: 99.43%    E-value: 2.6e-52   Bit-score: 211.5
This UCNE has 2 paralogous regions in Armadillo

Opossum (monDom5):
Region #1:   chr1:354206632-354206983   Identity: 99.15%    E-value: 1.5e-48   Bit-score: 199.3
This UCNE has 3 paralogous regions in Opossum

Platypus (ornAna1):
Region #1:   chrX1:23424447-23424798   Identity: 98.01%    E-value: 8.1e-62   Bit-score: 242.5
This UCNE has 2 paralogous regions in Platypus

Zebra_finch (taeGut1):
Region #1:   chr13:4148951-4149302   Identity: 97.44%    E-value: 1.1e-56   Bit-score: 224.8
This UCNE has 2 paralogous regions in Zebra_finch

Lizard (anoCar2):
Region #1:   chrUn_GL343205:3872472-3872823   Identity: 96.31%    E-value: 1.2e-61   Bit-score: 241.9
This UCNE has 3 paralogous regions in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584705:575226-575576   Identity: 97.72%    E-value: 4.4e-56   Bit-score: 223.9
This UCNE has 3 paralogous regions in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172834:568846-569126   Identity: 79.72%    E-value: 3e-25   Bit-score: 120.6
This UCNE has 2 paralogous regions in Xenopus

Fugu (fr2):
Region #1:   chrUn:170287940-170288263   Identity: 81.96%    E-value: 1.1e-49   Bit-score: 196.4
Region #2:   chrUn:142442366-142442588   Identity: 85.2%    E-value: 8.6e-38   Bit-score: 156.9
This UCNE has 1 paralogous region in Fugu

Medaka (oryLat2):
Region #1:   chr10:16881539-16881841   Identity: 83.22%    E-value: 3.2e-42   Bit-score: 171.8
Region #2:   ultracontig182:360953-361143   Identity: 87.96%    E-value: 1.1e-29   Bit-score: 130.1
This UCNE has 2 paralogous regions in Medaka

Stickleback (gasAcu1):
Region #1:   chrIV:14121696-14121956   Identity: 85.5%    E-value: 2.5e-41   Bit-score: 168.9
Region #2:   chrVII:18856290-18856520   Identity: 81.39%    E-value: 5.6e-31   Bit-score: 134.5
This UCNE has 1 paralogous region in Stickleback

Tetraodon (tetNig2):
Region #1:   chr1:3012803-3013125   Identity: 81.48%    E-value: 2.1e-49   Bit-score: 195.5
Region #2:   chr7:8130222-8130444   Identity: 83.86%    E-value: 1.4e-36   Bit-score: 152.9
This UCNE has 1 paralogous region in Tetraodon

Zebrafish (danRer7):
Region #1:   chr14:36287453-36287797   Identity: 82.9%    E-value: 4.7e-34   Bit-score: 145.5
Region #2:   chr21:32849407-32849708   Identity: 82.51%    E-value: 4.2e-28   Bit-score: 125.7
This UCNE has 2 paralogous regions in Zebrafish

Lamprey (petMar1):
This UCNE has 3 paralogous regions in Lamprey

Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):