General information about the entry |
Entry location: | intron |
Position: | chr8:14167088-14167306  |
Length: | 219 nt |
Sequence: | chr8_Agamemnon.fasta |
Overlapping gene: | SGCZ |
Paralogs: | chr17:47501508-47501726 chr20:5530032-5530265 chr3:182178082-182178300 chr4:99802056-99802274 chr5:176072887-176072985 chr7:81092241-81092441
|
External links: |
CONDOR database: | |
VISTA Enhancer Browser: | |
UCE (Bejerano et al. 2004): | |
Other browsers view: | [Ensembl]
[ECR browser]
[Ancora]
|
Conservation in chicken: |
Chicken (galGal3): | Region: chr4:61480597-61480816        Identity: >95%
|
Conservation in other species: |
Mouse (mm10): | This UCNE has 14 paralogous regions in Mouse
Paralog #1:   chr3:138555410-138555623   Identity: 90.87%
   E-value: 4.1e-41   Bit-score: 173.5 |
Paralog #2:   chrX:61785938-61786151   Identity: 89.95%
   E-value: 4.5e-40   Bit-score: 170.1 |
Paralog #3:   chr13:109164405-109164618   Identity: 87.67%
   E-value: 1.8e-37   Bit-score: 161.4 |
Paralog #4:   chr12:61580085-61580297   Identity: 85.84%
   E-value: 1e-34   Bit-score: 152.2 |
Paralog #5:   chr4:74664243-74664454   Identity: 82.49%
   E-value: 3.5e-31   Bit-score: 140.5 |
Paralog #6:   chr5:15559492-15559701   Identity: 74.31%
   E-value: 4.8e-20   Bit-score: 103.5 |
Paralog #7:   chrX:96363000-96363201   Identity: 75%
   E-value: 3.1e-19   Bit-score: 100.8 |
Paralog #8:   chr5:14884700-14884909   Identity: 72.81%
   E-value: 6.9e-19   Bit-score: 99.7 |
Paralog #9:   chr1:169591488-169591641   Identity: 76.92%
   E-value: 0.000000000000013   Bit-score: 85.5 |
Paralog #10:   chr19:38386829-38387031   Identity: 68.42%
   E-value: 0.0000000000015   Bit-score: 78.6 |
Paralog #11:   chr9:108624282-108624410   Identity: 74.63%
   E-value: 0.000000013   Bit-score: 65.5 |
Paralog #12:   chr16:70286432-70286553   Identity: 74.8%
   E-value: 0.00000012   Bit-score: 62.3 |
Paralog #13:   chr18:70228122-70228306   Identity: 65.31%
   E-value: 0.00000019   Bit-score: 61.7 |
Paralog #14:   chr16:27968173-27968389   Identity: 63.39%
   E-value: 0.0000007   Bit-score: 59.8 |
|
|
Armadillo (dasNov1): | This UCNE has 8 paralogous regions in Armadillo
Paralog #1:   scaffold_120559:3484-3702   Identity: 95.91%
   E-value: 1.2e-50   Bit-score: 205.3 |
Paralog #2:   scaffold_223498:1143-1360   Identity: 94.52%
   E-value: 2.3e-49   Bit-score: 201.1 |
Paralog #3:   scaffold_18306:6979-7198   Identity: 93.21%
   E-value: 1e-47   Bit-score: 195.6 |
Paralog #4:   scaffold_72927:3881-4096   Identity: 89.04%
   E-value: 3.4e-42   Bit-score: 177.3 |
Paralog #5:   scaffold_1177:143900-144115   Identity: 88.58%
   E-value: 1.1e-41   Bit-score: 175.5 |
Paralog #6:   scaffold_182358:265-471   Identity: 85.39%
   E-value: 9.7e-38   Bit-score: 162.5 |
Paralog #7:   scaffold_17900:46597-46805   Identity: 82.65%
   E-value: 7.6e-34   Bit-score: 149.5 |
Paralog #8:   scaffold_72861:1349-1468   Identity: 85.6%
   E-value: 3.2e-16   Bit-score: 91 |
|
|
Opossum (monDom5): | This UCNE has 3 paralogous regions in Opossum
Paralog #1:   chr5:52267586-52267805   Identity: 95.48%
   E-value: 2.5e-54   Bit-score: 217.8 |
Paralog #2:   chr2:157580409-157580628   Identity: 94.57%
   E-value: 3.7e-53   Bit-score: 213.9 |
Paralog #3:   chrX:41011174-41011384   Identity: 79.11%
   E-value: 2.4e-32   Bit-score: 144.8 |
|
|
Platypus (ornAna1): | This UCNE has 2 paralogous regions in Platypus
Paralog #1:   Ultra319:665-881   Identity: 93.61%
   E-value: 2.5e-48   Bit-score: 197 |
Paralog #2:   Contig125818:2-166   Identity: 87.35%
   E-value: 4.9e-28   Bit-score: 129.6 |
|
|
Zebra_finch (taeGut1): | This UCNE has 1 paralogous region in Zebra_finch
Paralog #1:   chr4:20352379-20352597   Identity: 94.12%
   E-value: 1.3e-49   Bit-score: 200.7 |
|
|
Lizard (anoCar2): | This UCNE has 2 paralogous regions in Lizard
Paralog #1:   chrUn_GL343307:1422738-1422954   Identity: 92.24%
   E-value: 6.8e-47   Bit-score: 192.1 |
Paralog #2:   chrUn_GL343526:376130-376247   Identity: 70%
   E-value: 0.000039   Bit-score: 53.4 |
|
|
Painted_turtle (chrPic1): | This UCNE has 1 paralogous region in Painted_turtle
Paralog #1:   JH584391:5545568-5545787   Identity: 93.67%
   E-value: 7.5e-50   Bit-score: 202.5 |
|
|
Xenopus (xenTro3): | This UCNE has 1 paralogous region in Xenopus
Paralog #1:   GL172747:2613459-2613678   Identity: 90.05%
   E-value: 1.9e-44   Bit-score: 183.7 |
|
|
Fugu (fr2): | This UCNE has 3 paralogous regions in Fugu
Paralog #1:   chrUn:22695985-22696083   Identity: 75.76%
   E-value: 0.000000000059   Bit-score: 67.1 |
Paralog #2:   chrUn:312525728-312525822   Identity: 71.58%
   E-value: 0.000000099   Bit-score: 56.4 |
Paralog #3:   chrUn:159405846-159405942   Identity: 69%
   E-value: 0.000027   Bit-score: 48.3 |
|
|
Medaka (oryLat2): | This UCNE has 2 paralogous regions in Medaka
Paralog #1:   ultracontig115:5469513-5469608   Identity: 76.04%
   E-value: 0.00000000055   Bit-score: 64 |
Paralog #2:   chr22:18057509-18057628   Identity: 69.17%
   E-value: 0.0000000079   Bit-score: 60.2 |
|
|
Stickleback (gasAcu1): | Region #1:   chrVI:9191962-9192090   Identity: 64.89%
   E-value: 0.000009   Bit-score: 50.1 |
This UCNE has 2 paralogous regions in Stickleback
Paralog #1:   chrXV:1700588-1700696   Identity: 68.18%
   E-value: 0.0000005   Bit-score: 54.2 |
Paralog #2:   chrIV:1784495-1784594   Identity: 68%
   E-value: 0.0000033   Bit-score: 51.5 |
|
|
Tetraodon (tetNig2): | This UCNE has 2 paralogous regions in Tetraodon
Paralog #1:   chr10:2542575-2542671   Identity: 70.1%
   E-value: 0.0000003   Bit-score: 54.8 |
Paralog #2:   chr20:1702645-1702743   Identity: 71.72%
   E-value: 0.00000058   Bit-score: 53.8 |
|
|
Zebrafish (danRer7): | Region #1:   chr13:12550187-12550255   Identity: 78.26%
   E-value: 0.000027   Bit-score: 49.2 |
This UCNE has 2 paralogous regions in Zebrafish
Paralog #1:   chr14:45821331-45821432   Identity: 74.51%
   E-value: 0.00000000095   Bit-score: 64.1 |
Paralog #2:   chr5:71182958-71183054   Identity: 75.26%
   E-value: 0.0000000032   Bit-score: 62.3 |
|
|
Lamprey (petMar1): |
|
Ciona_intestinalis (ci2): |
|
Sea_urchin (strPur2): |
|
Lancelet (braFlo1): |
|