Ultraconserved Gene Regulatory Blocks

UCNE: chr9_Siddhartha
(id = 35402)

General information about the entry

Entry location:

UTR

Position:

chr9:131457472-131457819

Length:

348 nt

Sequence:

chr9_Siddhartha.fasta

Overlapping gene:

SET

Paralogs:

chr1:18812220-18812474
chr1:92539229-92539565
chr1:160641353-160641464
chr1:179154346-179154704
chr10:34679756-34680094
chr11:23464641-23464980
chr11:118703540-118703650
chr12:44121705-44121856
chr12:78841527-78841667
chr12:107666120-107666466
chr13:24486227-24486535
chr14:20995401-20995742
chr14:35576151-35576378
chr14:36480266-36480448
chr14:51904824-51905171
chr17:56552651-56552991
chr17:70738803-70739113
chr18:12128528-12128776
chr2:27969033-27969365
chr2:89103070-89103401
chr2:96518438-96518769
chr2:97914056-97914387
chr2:98125022-98125353
chr2:128846682-128847014
chr2:156339535-156339859
chr20:432485-432665
chr22:17153621-17153869
chr3:81662742-81663077
chr3:138733245-138733511
chr3:150988456-150988793
chr3:155706493-155706831
chr4:121815766-121816065
chr5:59754844-59755179
chr5:96391240-96391583
chr7:72529917-72530042
chr7:74341584-74341687
chr7:74692594-74692719
chr7:74906844-74906969
chr7:99892542-99892657
chr7:142831714-142831885
chr8:21211231-21211561
chr9:136959843-136960061
chr9:140534240-140534372
chrUn_gl000212:3759-4090
chrX:15937092-15937465
chrX:84011529-84011876
chrX:116098149-116098487

External links:

CONDOR database:

VISTA Enhancer Browser:

UCE (Bejerano et al. 2004):

Other browsers view:

[Ensembl] [ECR browser] [Ancora]

Conservation in chicken:

Chicken (galGal3):

Region: chr17:5841272-5841629 Identity: >95%

Conservation in other species:

Mouse (mm10):

Region #1: chr2:30071454-30071803 Identity: 83.43% E-value: 2.9e-39 Bit-score: 168.1

This UCNE has 25 paralogous regions in Mouse

Paralog #1: chr18:34420966-34421296 Identity: 83.29% E-value: 8.2e-37 Bit-score: 159.9

Paralog #2: chr17:81954616-81954955 Identity: 79.37% E-value: 2.3e-33 Bit-score: 148.4

Paralog #3: chr9:6816397-6816755 Identity: 77.27% E-value: 3.8e-32 Bit-score: 144.4

Paralog #4: chr12:94000401-94000762 Identity: 77.45% E-value: 1.2e-31 Bit-score: 142.7

Paralog #5: chr1:44922213-44922562 Identity: 77.18% E-value: 3.7e-31 Bit-score: 141.1

Paralog #6: chr7:96411874-96412204 Identity: 77.78% E-value: 8.2e-31 Bit-score: 140

Paralog #7: chr5:89498299-89498627 Identity: 77.84% E-value: 4e-30 Bit-score: 137.7

Paralog #8: chr1:94205957-94206269 Identity: 79.94% E-value: 1.8e-29 Bit-score: 135.5

Paralog #9: chr16:15453270-15453666 Identity: 71.74% E-value: 3.9e-28 Bit-score: 131.1

Paralog #10: chr18:36190872-36191200 Identity: 75.42% E-value: 4.3e-28 Bit-score: 130.9

Paralog #11: chr3:34184715-34184967 Identity: 83.85% E-value: 7e-28 Bit-score: 130.2

Paralog #12: chr4:34379346-34379685 Identity: 74.18% E-value: 5.5e-26 Bit-score: 123.9

Paralog #13: chr6:7645138-7645435 Identity: 71.43% E-value: 5.3e-23 Bit-score: 114

Paralog #14: chr18:49402496-49402832 Identity: 68.72% E-value: 3.2e-18 Bit-score: 98.1

Paralog #15: chr1:162769799-162770074 Identity: 72.89% E-value: 7.7e-16 Bit-score: 90.2

Paralog #16: chrX:77716293-77716427 Identity: 87.77% E-value: 0.0000000000016 Bit-score: 79.2

Paralog #17: chr5:89689153-89689288 Identity: 85.31% E-value: 0.000000000026 Bit-score: 75.2

Paralog #18: chrX:120116343-120116487 Identity: 83.22% E-value: 0.000000000047 Bit-score: 74.3

Paralog #19: chr12:63711820-63712055 Identity: 70.42% E-value: 0.000000000094 Bit-score: 73.3

Paralog #20: chr7:141144530-141144758 Identity: 69.17% E-value: 0.00000000042 Bit-score: 71.2

Paralog #21: chr1:183204910-183205039 Identity: 83.94% E-value: 0.0000000012 Bit-score: 69.6

Paralog #22: chr4:93264781-93264913 Identity: 82.86% E-value: 0.0000000017 Bit-score: 69.2

Paralog #23: chr17:16559689-16559843 Identity: 76.13% E-value: 0.00000001 Bit-score: 66.6

Paralog #24: chr11:99972816-99972979 Identity: 71.6% E-value: 0.000000055 Bit-score: 64.1

Paralog #25: chr7:64355670-64355804 Identity: 77.7% E-value: 0.00000044 Bit-score: 61.1

Armadillo (dasNov1):

Region #1: scaffold_8128:40274-40619 Identity: 97.99% E-value: 1.1e-54 Bit-score: 219.4

Region #2: scaffold_26688:17452-17791 Identity: 95.32% E-value: 5.4e-50 Bit-score: 203.8

Region #3: scaffold_89220:1909-2244 Identity: 91.15% E-value: 4.9e-45 Bit-score: 187.4

Region #4: scaffold_64324:964-1294 Identity: 88.52% E-value: 2.5e-40 Bit-score: 171.7

Region #5: scaffold_43945:1891-2228 Identity: 85.71% E-value: 6e-38 Bit-score: 163.8

Region #6: scaffold_175698:1220-1555 Identity: 85.39% E-value: 7.6e-38 Bit-score: 163.5

Region #7: scaffold_158298:673-1003 Identity: 85.8% E-value: 8.7e-38 Bit-score: 163.3

Region #8: scaffold_17142:13397-13734 Identity: 86.99% E-value: 1.3e-37 Bit-score: 162.7

Region #9: scaffold_20665:5735-6026 Identity: 81.64% E-value: 2.6e-28 Bit-score: 131.8

Region #10: scaffold_40899:8249-8675 Identity: 69.05% E-value: 4.3e-27 Bit-score: 127.8

Region #11: scaffold_14317:13654-13955 Identity: 77.51% E-value: 2.3e-25 Bit-score: 122

Region #12: scaffold_191628:4141-4354 Identity: 87.05% E-value: 1.7e-22 Bit-score: 112.5

Region #13: scaffold_115238:5498-5723 Identity: 85.65% E-value: 2.3e-22 Bit-score: 112.1

Region #14: scaffold_10159:4901-5051 Identity: 94.16% E-value: 4.9e-17 Bit-score: 94.4

Region #15: scaffold_159502:3550-3751 Identity: 81.86% E-value: 0.0000000000000019 Bit-score: 89.1

Region #16: scaffold_17959:14200-14356 Identity: 87.9% E-value: 0.000000000000012 Bit-score: 86.5

Region #17: scaffold_28556:5486-5638 Identity: 87.01% E-value: 0.00000000000082 Bit-score: 80.3

Region #18: scaffold_185751:2983-3103 Identity: 95.93% E-value: 0.0000000000069 Bit-score: 77.2

Region #19: scaffold_2047:133974-134116 Identity: 87.41% E-value: 0.000000000007 Bit-score: 77.2

Region #20: scaffold_40141:5707-5951 Identity: 71.15% E-value: 0.00000000006 Bit-score: 74.1

Region #21: scaffold_32210:276-398 Identity: 85.61% E-value: 0.0000000058 Bit-score: 67.5

Region #22: scaffold_10038:6119-6288 Identity: 76% E-value: 0.0000000082 Bit-score: 67

This UCNE has 6 paralogous regions in Armadillo

Opossum (monDom5):

Region #1: chr1:454490437-454490782 Identity: 95.47% E-value: 1.5e-49 Bit-score: 202.6

This UCNE has 15 paralogous regions in Opossum

Platypus (ornAna1):

Region #1: Contig15382:4747-5100 Identity: 94.66% E-value: 8.6e-59 Bit-score: 232.4

Zebra_finch (taeGut1):

Region #1: chr17:5751508-5751912 Identity: 80.84% E-value: 5.8e-44 Bit-score: 182.5

Lizard (anoCar2):

Painted_turtle (chrPic1):

Region #1: JH584612:7222959-7223050 Identity: 95.7% E-value: 0.000000046 Bit-score: 64.3

This UCNE has 1 paralogous region in Painted_turtle

Xenopus (xenTro3):

Region #1: GL172790:237871-238194 Identity: 72.99% E-value: 2.9e-23 Bit-score: 114

Fugu (fr2):

Medaka (oryLat2):

Stickleback (gasAcu1):

Tetraodon (tetNig2):

Zebrafish (danRer7):

Lamprey (petMar1):

Ciona_intestinalis (ci2):

Sea_urchin (strPur2):

Lancelet (braFlo1):

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UCNE: chr9_Siddhartha (id = 35402)

UCNE: chr9_Siddhartha
(id = 35402)