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08:45 - 08:50 |
Welcome - Introduction |
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09:05 - 10:30 |
Promoter structure and function:
Talks:
-
Martha Bulyk:
Harvard University (USA)
TBD
-
Bas van Stensel:
Netherlands Cancer Institute (Netherlands)
TBD
-
Torrey Rhyne-Carrigg:
University of California San Diego (USA)
The RNA Polymerase II Core Promoter in Bilateria
-
Andrey Buyan:
Institute of Protein Research, RAS (Russia)
Joint Promoterome-Proteome Atlas
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10:30 - 11:00 |
Coffee break + posters |
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11:00 - 12:30 |
Technological advances in promoter research:
Talks:
-
Alexander Stark:
IMP, Vienna BioCenter (Austria)
TBD
-
Yaron Orenstein:
Bar-Ilan University (Israel)
Designing synthetic universal promoter sequences
Round table discussion:
- What is a promoter, what is an enhancer?
- Can we predict gene regulatory function from DNA sequence?
- Can we engineer promoters with desired regulatory properties?
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12:30 - 13:30 |
Lunch + posters |
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13:30 - 15:00 |
TSS prediction challenge:
Talks 1 - Background:
-
Sascha Duttke:
Washington State University (USA)
Keynote on promoteromics
-
TBD:
Lessons from the IBIS challenge
Talks 2 - Challenge presentation:
-
Philipp Bucher:
Swiss Institute of Bioinformatics ( Switzerland)
Challenge overview
-
Vsevolod Makeev:
Cancer Research UK, Manchester (UK)
Data formats, performance metrics, challenge rules and timeline
Question session for prospective challenge participants
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15:00 - 15:30 |
Coffee break + posters |
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15:30 - 17:10 |
Sunsetting of EPD, next-generation biodata resources:
-
Christophe Dessimoz
Swiss Institute of Bioinformatics (Switzerland)
The future of biodata resources
-
Philipp Bucher
Swiss Institute of Bioinformatics (Switzerland)
EPD today, outlook to the future
-
Julia Naas:
Helmholtz Munich, Germany)
Open Problems in Single-Cell Analysis: Building a Community-Driven, Living Benchmarking Platform
Round table discussion:
- What should a future biodata ecosystem look like?
- FAIR principles in the era of AI agents
- Role of publishers and funders in data-driven research
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|
17:10 - 17:15 |
Closing remarks |
