ChIP-Seq Analysis Tutorial

Output Files used to generate the Figures above

Peak files based on different relative fold enrichment factor thresholds

Peak files based on different tag counts thresholds

Motif enrichment studies (output from OProf)

Chromatine profile around STAT1 binding sites (output from ChIP-Cor)

DNaseI footprints at STAT1 sites (output from ChIP-Cor)

Sequence conservation around STAT1 peaks

Motif analysis

MEME-ChIP Output