RSA-tools - peak-motifs result

Analysis: STAT1_motif_Analysis (11/01/2013 11:12)

Input files
motif_db_jaspar_core_vertebrates /home/rsat/rsa-tools/public_html/data/motif_databases/JASPAR/jaspar_core_vertebrates_2009_10.tf
test_seq /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/peak-motifspeak_seq
Directories
output /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/
oligos_7nt_mkv4_m1 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/oligos_7nt_mkv4_m1/
oligos_7nt_mkv4_m2 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/oligos_7nt_mkv4_m2/
oligos_7nt_mkv4_m3 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/oligos_7nt_mkv4_m3/
local_words_7nt_m1 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/
local_words_7nt_m2 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/
local_words_7nt_m3 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/
positions_7nt_m1 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/positions_7nt_m1/
positions_7nt_m2 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/positions_7nt_m2/
positions_7nt_m3 /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/positions_7nt_m3/
Output files
1nt_test_freq /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
1nt_test_heatmap /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
1nt_test_inclusive /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
1nt_test_profiles /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
1nt_test_profiles_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
1nt_test_profiles_index /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_test_transitions /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
2nt_test_freq /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
2nt_test_heatmap /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
2nt_test_inclusive /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
2nt_test_profiles /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
2nt_test_profiles_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
2nt_test_profiles_index /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_test_transitions /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
archive /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/peak-motifs_archive.zip
links /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/reports/peak-motifs_links.html
local_words_7nt /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab
local_words_7nt_2pssm /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_log.txt
local_words_7nt_asmb /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm.asmb
local_words_7nt_m1_logo /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_logo.png
local_words_7nt_m1_logo_rc /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_logo_rc.png
local_words_7nt_m1_pssm_enrichment /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_scan_mkv1_enrichment.tab
local_words_7nt_m1_pssm_enrichment_png /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_scan_mkv1_enrichment.png
local_words_7nt_m1_pssm_site_distrib /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_site_distrib.tab
local_words_7nt_m1_pssm_site_distrib_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_site_distrib.png
local_words_7nt_m1_pssm_sites /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_sites.tab
local_words_7nt_m1_pssm_sites_per_peak /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_sites_per_peak.tab
local_words_7nt_m1_pssm_sites_per_peak_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_sites_per_peak.png
local_words_7nt_m1_tab /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1.tab
local_words_7nt_m1_tf /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1.tf
local_words_7nt_m1_vs_db_jaspar_core_vertebrates /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_vs_db_jaspar_core_vertebrates.tab
local_words_7nt_m1_vs_db_jaspar_core_vertebrates_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_vs_db_jaspar_core_vertebrates.html
local_words_7nt_m1_vs_ref /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_vs_ref.tab
local_words_7nt_m1_vs_ref_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m1/peak-motifs_local_words_7nt_m1_vs_ref.html
local_words_7nt_m2_logo /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_logo.png
local_words_7nt_m2_logo_rc /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_logo_rc.png
local_words_7nt_m2_pssm_enrichment /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_scan_mkv1_enrichment.tab
local_words_7nt_m2_pssm_enrichment_png /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_scan_mkv1_enrichment.png
local_words_7nt_m2_pssm_site_distrib /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_site_distrib.tab
local_words_7nt_m2_pssm_site_distrib_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_site_distrib.png
local_words_7nt_m2_pssm_sites /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_sites.tab
local_words_7nt_m2_pssm_sites_per_peak /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_sites_per_peak.tab
local_words_7nt_m2_pssm_sites_per_peak_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_sites_per_peak.png
local_words_7nt_m2_tab /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2.tab
local_words_7nt_m2_tf /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2.tf
local_words_7nt_m2_vs_db_jaspar_core_vertebrates /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_vs_db_jaspar_core_vertebrates.tab
local_words_7nt_m2_vs_db_jaspar_core_vertebrates_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_vs_db_jaspar_core_vertebrates.html
local_words_7nt_m2_vs_ref /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_vs_ref.tab
local_words_7nt_m2_vs_ref_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m2/peak-motifs_local_words_7nt_m2_vs_ref.html
local_words_7nt_m3_logo /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_logo.png
local_words_7nt_m3_logo_rc /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_logo_rc.png
local_words_7nt_m3_pssm_enrichment /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_scan_mkv1_enrichment.tab
local_words_7nt_m3_pssm_enrichment_png /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_scan_mkv1_enrichment.png
local_words_7nt_m3_pssm_site_distrib /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_site_distrib.tab
local_words_7nt_m3_pssm_site_distrib_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_site_distrib.png
local_words_7nt_m3_pssm_sites /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_sites.tab
local_words_7nt_m3_pssm_sites_per_peak /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_sites_per_peak.tab
local_words_7nt_m3_pssm_sites_per_peak_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_sites_per_peak.png
local_words_7nt_m3_tab /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3.tab
local_words_7nt_m3_tf /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3.tf
local_words_7nt_m3_vs_db_jaspar_core_vertebrates /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_vs_db_jaspar_core_vertebrates.tab
local_words_7nt_m3_vs_db_jaspar_core_vertebrates_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_vs_db_jaspar_core_vertebrates.html
local_words_7nt_m3_vs_ref /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_vs_ref.tab
local_words_7nt_m3_vs_ref_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/discovered_motifs/local_words_7nt_m3/peak-motifs_local_words_7nt_m3_vs_ref.html
local_words_7nt_pssm_counts /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.txt
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test_seqlen_distrib /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/data/sequences/peak-motifs_test_seqlen_distrib.tab
test_seqlen_distrib_graph /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/data/sequences/peak-motifs_test_seqlen_distrib.png
timelog /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/reports/peak-motifs_timelog.txt
timelog_html /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/reports/peak-motifs_timelog.html
timetable /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/reports/peak-motifs_timetable.txt