Mohammed 2015, Progesterone receptor modulates estrogen receptor-α action in breast cancer.


The series includes the following experiements (subSeries):



From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1669011.sga T47D|ESR1|Full_Media 3hr|rep1 ESR1 GSM1669011
2 GSM1669012.sga T47D|ESR1|Full_Media 3hr|rep2 ESR1 GSM1669012
3 GSM1669013.sga T47D|ESR1|Full_Media 3hr|rep3 ESR1 GSM1669013
4 GSM1669014.sga T47D|ESR1|Progesterone 3hr|rep1 ESR1 GSM1669014
5 GSM1669015.sga T47D|ESR1|Progesterone 3hr|rep2 ESR1 GSM1669015
6 GSM1669016.sga T47D|ESR1|Progesterone 3hr|rep3 ESR1 GSM1669016
7 GSM1669017.sga T47D|ESR1|R5020 3hr|rep1 ESR1 GSM1669017
8 GSM1669018.sga T47D|ESR1|R5020 3hr|rep2 ESR1 GSM1669018
9 GSM1669019.sga T47D|ESR1|R5020 3hr|rep3 ESR1 GSM1669019
10 GSM1669020.sga T47D|input|Full_Media 3hr|rep1 input GSM1669020
11 GSM1669021.sga T47D|input|Full_Media 3hr|rep2 input GSM1669021
12 GSM1669022.sga T47D|input|Full_Media 3hr|rep3 input GSM1669022
13 GSM1669023.sga T47D|EP300|Full_Media 3hr|rep1 EP300 GSM1669023
14 GSM1669024.sga T47D|EP300|Full_Media 3hr|rep2 EP300 GSM1669024
15 GSM1669025.sga T47D|EP300|Full_Media 3hr|rep3 EP300 GSM1669025
16 GSM1669026.sga T47D|EP300|Progesterone 3hr|rep1 EP300 GSM1669026
17 GSM1669027.sga T47D|EP300|Progesterone 3hr|rep2 EP300 GSM1669027
18 GSM1669028.sga T47D|EP300|Progesterone 3hr|rep3 EP300 GSM1669028
19 GSM1669029.sga T47D|EP300|R5020 3hr|rep1 EP300 GSM1669029
20 GSM1669030.sga T47D|EP300|R5020 3hr|rep2 EP300 GSM1669030
21 GSM1669031.sga T47D|EP300|R5020 3hr|rep3 EP300 GSM1669031
22 GSM1669032.sga T47D|PGR|Full_Media 3hr|rep1 PGR GSM1669032
23 GSM1669033.sga T47D|PGR|Full_Media 3hr|rep2 PGR GSM1669033
24 GSM1669034.sga T47D|PGR|Full_Media 3hr|rep3 PGR GSM1669034
25 GSM1669035.sga T47D|PGR|Progesterone 3hr|rep1 PGR GSM1669035
26 GSM1669036.sga T47D|PGR|Progesterone 3hr|rep2 PGR GSM1669036
27 GSM1669037.sga T47D|PGR|Progesterone 3hr|rep3 PGR GSM1669037
28 GSM1669038.sga T47D|PGR|R5020 3hr|rep1 PGR GSM1669038
29 GSM1669039.sga T47D|PGR|R5020 3hr|rep2 PGR GSM1669039
30 GSM1669040.sga T47D|PGR|R5020 3hr|rep3 PGR GSM1669040
31 GSM1669041.sga MCF7|EP300|Progesterone 3hr| EP300 GSM1669041
32 GSM1669042.sga MCF7|ESR1|Full_Media 3hr|rep1 ESR1 GSM1669042
33 GSM1669043.sga MCF7|ESR1|Full_Media 3hr|rep2 ESR1 GSM1669043
34 GSM1669044.sga MCF7|ESR1|Full_Media 3hr|rep3 ESR1 GSM1669044
35 GSM1669045.sga MCF7|ESR1|Progesterone 3hr|rep1 ESR1 GSM1669045
36 GSM1669046.sga MCF7|ESR1|Progesterone 3hr|rep2 ESR1 GSM1669046
37 GSM1669047.sga MCF7|ESR1|Progesterone 3hr|rep3 ESR1 GSM1669047
38 GSM1669048.sga MCF7|ESR1|R5020 3hr|rep1 ESR1 GSM1669048
39 GSM1669049.sga MCF7|ESR1|R5020 3hr|rep2 ESR1 GSM1669049
40 GSM1669050.sga MCF7|ESR1|R5020 3hr|rep3 ESR1 GSM1669050
41 GSM1669051.sga MCF7|input|Full_Media 3hr|rep1 input GSM1669051
42 GSM1669052.sga MCF7|input|Full_Media 3hr|rep2 input GSM1669052
43 GSM1669053.sga MCF7|input|Full_Media 3hr|rep3 input GSM1669053
44 GSM1669054.sga MCF7|EP300|Full_Media 3hr| EP300 GSM1669054
45 GSM1669055.sga MCF7|EP300|Full_Media 3hr|rep1 EP300 GSM1669055
46 GSM1669056.sga MCF7|EP300|Full_Media 3hr|rep2 EP300 GSM1669056
47 GSM1669057.sga MCF7|EP300|Full_Media 3hr|rep3 EP300 GSM1669057
48 GSM1669058.sga MCF7|EP300|Progesterone 24hr| EP300 GSM1669058
49 GSM1669059.sga MCF7|EP300|Progesterone 3hr|rep1 EP300 GSM1669059
50 GSM1669060.sga MCF7|EP300|Progesterone 3hr|rep2 EP300 GSM1669060
51 GSM1669061.sga MCF7|EP300|Progesterone 3hr|rep3 EP300 GSM1669061
52 GSM1669062.sga MCF7|EP300|R5020 3hr| EP300 GSM1669062
53 GSM1669063.sga MCF7|EP300|R5020 24hr| EP300 GSM1669063
54 GSM1669064.sga MCF7|EP300|R5020 3hr|rep1 EP300 GSM1669064
55 GSM1669065.sga MCF7|EP300|R5020 3hr|rep2 EP300 GSM1669065
56 GSM1669066.sga MCF7|EP300|R5020 3hr|rep3 EP300 GSM1669066
57 GSM1669067.sga MCF7|PGR|Full_Media 3hr|rep1 PGR GSM1669067
58 GSM1669068.sga MCF7|PGR|Full_Media 3hr|rep2 PGR GSM1669068
59 GSM1669069.sga MCF7|PGR|Full_Media 3hr|rep3 PGR GSM1669069
60 GSM1669070.sga MCF7|PGR|Progesterone 3hr|rep1 PGR GSM1669070
61 GSM1669071.sga MCF7|PGR|Progesterone 3hr|rep2 PGR GSM1669071
62 GSM1669072.sga MCF7|PGR|Progesterone 3hr|rep3 PGR GSM1669072
63 GSM1669073.sga MCF7|PGR|R5020 3hr| PGR GSM1669073
64 GSM1669074.sga MCF7|PGR|R5020 24hr| PGR GSM1669074
65 GSM1669075.sga MCF7|PGR|R5020 3hr|rep1 PGR GSM1669075
66 GSM1669076.sga MCF7|PGR|R5020 3hr|rep2 PGR GSM1669076
67 GSM1669077.sga MCF7|PGR|R5020 3hr|rep3 PGR GSM1669077
68 GSM1669078.sga MCF7|ESR1|Vehicle 3hr|rep1 ESR1 GSM1669078
69 GSM1669079.sga MCF7|ESR1|E2 3hr|rep1 ESR1 GSM1669079
70 GSM1669080.sga MCF7|ESR1|PG 3hr|rep1 ESR1 GSM1669080
71 GSM1669081.sga MCF7|ESR1|E2+PG 3hr|rep1 ESR1 GSM1669081
72 GSM1669082.sga MCF7|ESR1|Vehicle 3hr|rep2 ESR1 GSM1669082
73 GSM1669083.sga MCF7|ESR1|E2 3hr|rep2 ESR1 GSM1669083
74 GSM1669084.sga MCF7|ESR1|PG 3hr|rep2 ESR1 GSM1669084
75 GSM1669085.sga MCF7|ESR1|E2+PG 3hr|rep2 ESR1 GSM1669085
76 GSM1669086.sga MCF7|ESR1|Vehicle 3hr|rep3 ESR1 GSM1669086
77 GSM1669087.sga MCF7|ESR1|E2 3hr|rep3 ESR1 GSM1669087
78 GSM1669088.sga MCF7|ESR1|PG 3hr|rep3 ESR1 GSM1669088
79 GSM1669089.sga MCF7|ESR1|E2+PG 3hr|rep3 ESR1 GSM1669089
80 GSM1669090.sga MCF7|PGR|Vehicle 3hr|rep1 PGR GSM1669090
81 GSM1669091.sga MCF7|PGR|E2 3hr|rep1 PGR GSM1669091
82 GSM1669092.sga MCF7|PGR|PG 3hr|rep1 PGR GSM1669092
83 GSM1669093.sga MCF7|PGR|E2+PG 3hr|rep1 PGR GSM1669093
84 GSM1669094.sga MCF7|PGR|Vehicle 3hr|rep2 PGR GSM1669094
85 GSM1669095.sga MCF7|PGR|E2 3hr|rep2 PGR GSM1669095
86 GSM1669096.sga MCF7|PGR|PG 3hr|rep2 PGR GSM1669096
87 GSM1669097.sga MCF7|PGR|E2+PG 3hr|rep2 PGR GSM1669097
88 GSM1669098.sga MCF7|PGR|Vehicle 3hr|rep3 PGR GSM1669098
89 GSM1669099.sga MCF7|PGR|E2 3hr|rep3 PGR GSM1669099
90 GSM1669100.sga MCF7|PGR|PG 3hr|rep3 PGR GSM1669100
91 GSM1669101.sga MCF7|PGR|E2+PG 3hr|rep3 PGR GSM1669101
92 GSM1669102.sga T47D|ESR1|Vehicle 3hr|rep1 ESR1 GSM1669102
93 GSM1669103.sga T47D|ESR1|E2 3hr|rep1 ESR1 GSM1669103
94 GSM1669104.sga T47D|ESR1|PG 3hr|rep1 ESR1 GSM1669104
95 GSM1669105.sga T47D|ESR1|E2+PG 3hr|rep1 ESR1 GSM1669105
96 GSM1669106.sga T47D|ESR1|Vehicle 3hr|rep2 ESR1 GSM1669106
97 GSM1669107.sga T47D|ESR1|E2 3hr|rep2 ESR1 GSM1669107
98 GSM1669108.sga T47D|ESR1|PG 3hr|rep2 ESR1 GSM1669108
99 GSM1669109.sga T47D|ESR1|E2+PG 3hr|rep2 ESR1 GSM1669109
100 GSM1669110.sga T47D|ESR1|Vehicle 3hr|rep3 ESR1 GSM1669110
101 GSM1669111.sga T47D|ESR1|E2 3hr|rep3 ESR1 GSM1669111
102 GSM1669112.sga T47D|ESR1|PG 3hr|rep3 ESR1 GSM1669112
103 GSM1669113.sga T47D|ESR1|E2+PG 3hr|rep3 ESR1 GSM1669113
104 GSM1669114.sga T47D|PGR|Vehicle 3hr|rep1 PGR GSM1669114
105 GSM1669115.sga T47D|PGR|E2 3hr|rep1 PGR GSM1669115
106 GSM1669116.sga T47D|PGR|PG 3hr|rep1 PGR GSM1669116
107 GSM1669117.sga T47D|PGR|E2+PG 3hr|rep1 PGR GSM1669117
108 GSM1669118.sga T47D|PGR|Vehicle 3hr|rep2 PGR GSM1669118
109 GSM1669119.sga T47D|PGR|E2 3hr|rep2 PGR GSM1669119
110 GSM1669120.sga T47D|PGR|PG 3hr|rep2 PGR GSM1669120
111 GSM1669121.sga T47D|PGR|E2+PG 3hr|rep2 PGR GSM1669121
112 GSM1669122.sga T47D|PGR|Vehicle 3hr|rep3 PGR GSM1669122
113 GSM1669123.sga T47D|PGR|E2 3hr|rep3 PGR GSM1669123
114 GSM1669124.sga T47D|PGR|PG 3hr|rep3 PGR GSM1669124
115 GSM1669125.sga T47D|PGR|E2+PG 3hr|rep3 PGR GSM1669125
116 GSM1669126.sga Xenograft_MCF7|input|Vehicle|rep1 input GSM1669126
117 GSM1669127.sga Xenograft_MCF7|input|Vehicle|rep2 input GSM1669127
118 GSM1669128.sga Xenograft_MCF7|input|E2+PG|rep1 input GSM1669128
119 GSM1669129.sga Xenograft_MCF7|input|E2+PG|rep2 input GSM1669129
120 GSM1669130.sga Xenograft_MCF7|input|E2|rep1 input GSM1669130
121 GSM1669131.sga Xenograft_MCF7|input|E2|rep2 input GSM1669131
122 GSM1669132.sga Xenograft_MCF7|ESR1|Vehicle|rep1 ESR1 GSM1669132
123 GSM1669133.sga Xenograft_MCF7|ESR1|Vehicle|rep2 ESR1 GSM1669133
124 GSM1669134.sga Xenograft_MCF7|ESR1|E2+PG|rep3 ESR1 GSM1669134
125 GSM1669135.sga Xenograft_MCF7|ESR1|E2+PG|rep4 ESR1 GSM1669135
126 GSM1669136.sga Xenograft_MCF7|ESR1|E2+PG|rep5 ESR1 GSM1669136
127 GSM1669137.sga Xenograft_MCF7|ESR1|E2+PG|rep6 ESR1 GSM1669137
128 GSM1669138.sga Xenograft_MCF7|ESR1|E2+PG|rep7 ESR1 GSM1669138
129 GSM1669139.sga Xenograft_MCF7|ESR1|E2+PG|rep8 ESR1 GSM1669139
130 GSM1669140.sga Xenograft_MCF7|ESR1|E2|rep9 ESR1 GSM1669140
131 GSM1669141.sga Xenograft_MCF7|ESR1|E2|rep10 ESR1 GSM1669141
132 GSM1669142.sga Xenograft_MCF7|ESR1|E2|rep11 ESR1 GSM1669142
133 GSM1669143.sga Xenograft_MCF7|ESR1|E2|rep12 ESR1 GSM1669143
134 GSM1669144.sga Xenograft_MCF7|ESR1|E2|rep13 ESR1 GSM1669144
135 GSM1669145.sga Xenograft_MCF7|ESR1|E2|rep14 ESR1 GSM1669145
136 GSM1669146.sga Xenograft_MCF7|PGR|Vehicle|rep1 PGR GSM1669146
137 GSM1669147.sga Xenograft_MCF7|PGR|Vehicle|rep2 PGR GSM1669147
138 GSM1669148.sga Xenograft_MCF7|PGR|E2+PG|rep3 PGR GSM1669148
139 GSM1669149.sga Xenograft_MCF7|PGR|E2+PG|rep4 PGR GSM1669149
140 GSM1669150.sga Xenograft_MCF7|PGR|E2+PG|rep5 PGR GSM1669150
141 GSM1669151.sga Xenograft_MCF7|PGR|E2+PG|rep6 PGR GSM1669151
142 GSM1669152.sga Xenograft_MCF7|PGR|E2+PG|rep7 PGR GSM1669152
143 GSM1669153.sga Xenograft_MCF7|PGR|E2+PG|rep8 PGR GSM1669153
144 GSM1669154.sga Xenograft_MCF7|PGR|E2|rep9 PGR GSM1669154
145 GSM1669155.sga Xenograft_MCF7|PGR|E2|rep10 PGR GSM1669155
146 GSM1669156.sga Xenograft_MCF7|PGR|E2|rep11 PGR GSM1669156
147 GSM1669157.sga Xenograft_MCF7|PGR|E2|rep12 PGR GSM1669157
148 GSM1669158.sga Xenograft_MCF7|PGR|E2|rep13 PGR GSM1669158
149 GSM1669159.sga Xenograft_MCF7|PGR|E2|rep14 PGR GSM1669159

Quality Control and Analysis

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v1.1.1. SAM files were then converted to BAM using samtools v0.1.14 and to BED using bamToBed v2.27.0 (bedtools). BED to SGA conversion was carried out using bed2sga (ChIP-Seq v. 1.5.3).


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Last update: 26 Oct 2018