The EPD viewer for S. pombe is made of the tracks given in the table below. The genome sequence track is provided by the EPD team (sequence was downloaded here). Note that when strand is n/a, it means that signal applies to both strands.
UCSC track name | Track description | Track resolution [bp] | Strand | Original dataset | Raw format | Tissue | Stage/Time point | Condition | MGA series name | PMID | |
---|---|---|---|---|---|---|---|---|---|---|---|
1 | Nucleosomes | centered MNase-seq tagsa | 20 | n/a | SRP028538 | SRA | n/a | n/a | wild-type | degennaro13 | 24100010 |
2 | H3K4me3 (WT) | centered H3K4me3 ChIP-seq tagsb | 10 | n/a | GSM1201989 | SRA | n/a | n/a | wild-type | degennaro13 | 24100010 |
3 | All CAGE (+) | 5′ end of CAGE reads | 1 | + | E-MTAB-3188, GSE110976 | FASTQ | n/a | n/a | wild-type | li15, thodberg18 | 25747261 |
4 | All CAGE (-) | 5′ end of CAGE reads | 1 | − | E-MTAB-3188, GSE110976 | FASTQ | n/a | n/a | wild-type | li15, thodberg18 | 25747261 |
5 | EPDnew promoters | EPDnew promoters v. 002 | 1c | n/ad | n/a | n/a | n/a | n/a | n/a | epd | 23193273 |
6 | RefSeq genes | RefSeq gene annotation | 1 | n/a | ftp.ncbi.n... | GFF | n/a | n/a | n/a | n/a | 22121212 |
These tracks are available at UCSC as a public hub named "EPD Viewer Hub".