Promoter element HMMs derived from EPD release 54 (March 1998):

• General eukaryotic TATA-box model trained from 860 unrelated promoter sequences:

 

Position	1	2	3	4	5	6	7	8	9	10	11	12
% A	19.4	23.4	5.0	83.5	4.4	89.2	71.0	84.8	45.0	35.7	15.5	18.5
% C	22.7	34.0	11.0	1.3	3.3	0.8	0.8	2.9	3.4	14.0	36.5	37.0
% G	26.5	30.8	4.5	1.4	0.9	1.7	0.5	9.5	16.4	38.4	36.3	30.4
% T	31.4	11.7	79.5	13.9	91.4	8.4	27.7	2.8	35.2	11.8	11.7	14.1
Consensus			T	A	T	A	A	A	W	R

• TATA-box HMM trained from 587 unrelated vertebrate promoter sequences:

 

Position	1	2	3	4	5	6	7	8	9	10	11	12
% A	17.8	25.1	5.4	81.0	5.9	88.2	74.4	81.0	47.2	28.3	15.5	17.6
% C	22.8	32.7	14.3	1.5	4.6	0.9	0.5	3.4	3.5	15.2	34.8	34.4
% G	27.3	29.8	5.8	1.1	0.9	1.8	0.5	12.9	21.5	45.4	37.5	32.6
% T	32.1	12.4	74.6	16.4	88.6	9.1	24.6	2.7	27.8	11.2	12.2	15.4
Consensus			T	A	T	A	A	A	D	R

TATA-box HMM trained from 128 unrelated plant promoter sequences:

 

Position	1	2	3	4	5	6	7	8	9	10	11	12
% A	26.7	21.5	5.7	86.4	2.1	92.6	62.2	93.6	24.1	55.5	15.0	25.2
% C	22.0	50.6	2.2	1.6	1.7	0.0	0.4	1.3	2.4	13.4	43.6	46.6
% G	16.1	13.2	1.6	2.4	1.5	0.0	0.5	3.9	6.5	14.3	29.5	19.9
% T	35.2	14.6	90.5	9.5	94.7	7.3	36.8	1.2	67.0	16.9	11.9	8.3
Consensus			T	A	T	A	W	A	W	W