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PWMEval-ChIP-peak - Evaluation of Binding Models based on ChIP-seq data (peak sets)

ChIP-seq Data Sets
Select available Data Sets
         Data Type :   
         Series :   
         Sample :   

Upload custom Data
      from a FILE (gzip or zip formats are also accepted):
      or from a URL:
      Score Field :
      Experiment :
      Feature  :     

Additional Input Data Options
 Repeat Masker      
Weight Matrix
PWMs from miscellaneous Libraries     
        Motif Library:  
        Motif :  
PWMs from CIS-BP Libraries     
        Motif Library:  
        Motif :  
Custom Weight Matrix
          Matrix Format

  Paste Matrix

  Or Upload (text File containing the matrix)
                      from a FILE :
                      or from a URL:

Options for Binding Prediction Method
  ChIP-seq peak ranking (peaks used for predictions)
From :     To :
  Sequence Length (bp) (for ChIP-seq data sets)
  Downstream Shift of Negative Set (bp)
Reverse peak ranking
         (By default, top-ranked peaks are used for prediction)
Sum occupancy score
  Best match scoring
  Background composition normalization
Uniform bg   Seq Library bg   Sequence-based bg
  Search Strand



Last update April 2021