Access the recommendation on F1000Prime

PWMScan - Genome-wide position weight matrix (PWM) scanner

Target Databases or Sequence Sets
Genome Assemblies

Intersect TFBS Predictions with Genomic Regions
      Upload custom list (in BED format)
         from a FILE:    
         or from a URL:
Upload Sequence Set in Fasta Format
      from a FILE
      or from a URL:

If you don't find your favorite genome assembly, please , and we will try to make it available.

Weight Matrix
PWMs from miscellaneous Libraries     
        Motif Library:  
        Motif :  
PWMs from CIS-BP Libraries     
        Motif Library:  
        Motif :  
Custom Weight Matrix
          Matrix Format

  Paste Matrix

  Or Upload (text File containing the matrix)
                      from a FILE :

                      or from a URL:

Consensus sequence
Scanning Options
        Search Strand
        Reference Position
  Non-overlapping matches



Last update April 2021