On-line Tutorial Series

ChIP-Seq Main Tutorial: Basic ChIP-Seq and SSA Tutorial (PDF, Microsoft Word Document, HTML)
ChIP-Seq Motif Tutorial: ChIP-Seq, SSA and PWMScan (PDF, Microsoft Word Document)
ChIP-Seq, SSA and PWMTools: Advanced Tutorial (PDF, Microsoft Word Document)
EPD Tutorial: How to validate a promoter collection with CAGE data (HTML)
Reproducing figures from papers